Variant report

Variant	rs7902237
Chromosome Location	chr10:119141161-119141162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119135075..119137421-chr10:119139743..119143361,4	K562	blood:
2	chr10:119131695..119134660-chr10:119137923..119141249,3	K562	blood:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 127 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs1008448	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[ASN][1000 genomes]
rs10377	0.87[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.97[LWK][hapmap];0.96[MKK][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs10787770	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10886054	0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.82[ASN][1000 genomes]
rs10886061	0.90[ASN][1000 genomes]
rs10886063	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10886064	0.90[ASN][1000 genomes]
rs10886065	0.88[ASN][1000 genomes]
rs11197960	0.90[ASN][1000 genomes]
rs11197968	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11197969	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11197970	0.90[ASN][1000 genomes]
rs11197974	0.90[ASN][1000 genomes]
rs11197975	0.92[ASN][1000 genomes]
rs11197976	0.92[ASN][1000 genomes]
rs11197977	0.92[ASN][1000 genomes]
rs11197981	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs11498892	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12243133	0.94[ASN][1000 genomes]
rs12243628	0.90[ASN][1000 genomes]
rs12247698	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12256994	0.94[ASN][1000 genomes]
rs12263512	0.90[ASN][1000 genomes]
rs12269460	0.90[ASN][1000 genomes]
rs12413507	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12414644	0.85[JPT][hapmap]
rs12571779	0.88[JPT][hapmap]
rs12573009	0.91[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs14240	0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs1468563	0.90[ASN][1000 genomes]
rs181440	0.87[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];0.84[MEX][hapmap];0.96[MKK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1935166	0.89[ASN][1000 genomes]
rs1935167	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1935168	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1954212	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1954213	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2052075	0.82[ASN][1000 genomes]
rs2096112	0.86[ASN][1000 genomes]
rs2244249	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2255367	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2275670	0.92[ASN][1000 genomes]
rs2275671	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2420457	0.91[ASN][1000 genomes]
rs2429505	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2487692	0.82[ASN][1000 genomes]
rs2490626	0.82[ASN][1000 genomes]
rs2490628	0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.82[ASN][1000 genomes]
rs2490631	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2532781	0.82[ASN][1000 genomes]
rs2532782	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2532783	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2532784	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2532785	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2532786	0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2532787	0.82[ASN][1000 genomes]
rs2532788	0.82[ASN][1000 genomes]
rs2532789	0.88[ASN][1000 genomes]
rs2532792	0.88[ASN][1000 genomes]
rs2532793	0.88[ASN][1000 genomes]
rs2532795	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2532796	0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2532809	0.85[JPT][hapmap]
rs2532813	0.82[ASN][1000 genomes]
rs2532815	0.82[ASN][1000 genomes]
rs2532817	0.91[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2532834	0.82[ASN][1000 genomes]
rs2532835	0.82[ASN][1000 genomes]
rs2532836	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2532838	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2532839	0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2532840	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2532841	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs2532842	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2532844	0.91[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs2794414	0.83[ASN][1000 genomes]
rs2794416	0.88[ASN][1000 genomes]
rs2794418	0.86[ASN][1000 genomes]
rs2794419	0.82[ASN][1000 genomes]
rs2794421	0.82[ASN][1000 genomes]
rs2794435	0.82[ASN][1000 genomes]
rs2794436	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2803799	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2803801	0.90[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2803802	0.82[ASN][1000 genomes]
rs2803803	0.83[ASN][1000 genomes]
rs2803804	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2803807	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2803810	0.91[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2803816	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs34247425	0.89[ASN][1000 genomes]
rs3523	0.83[JPT][hapmap]
rs363223	0.87[ASW][hapmap];0.89[LWK][hapmap];0.95[YRI][hapmap]
rs363227	0.85[JPT][hapmap]
rs363228	0.85[JPT][hapmap]
rs363230	0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]
rs363235	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs363236	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs363237	0.81[ASN][1000 genomes]
rs363238	0.85[JPT][hapmap]
rs363240	0.80[ASN][1000 genomes]
rs363242	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs363243	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs363271	0.85[JPT][hapmap]
rs363272	0.85[JPT][hapmap]
rs363275	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs363276	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs363278	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs363282	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs363303	0.84[JPT][hapmap]
rs3814229	0.90[ASN][1000 genomes]
rs3814230	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4751623	0.89[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4752051	0.80[JPT][hapmap]
rs4752054	0.90[ASN][1000 genomes]
rs6585431	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7070594	0.86[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs7072027	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7072785	0.88[ASN][1000 genomes]
rs7086651	0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs7087395	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7088401	0.89[ASN][1000 genomes]
rs72825530	0.88[ASN][1000 genomes]
rs7897828	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7898092	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7900191	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901203	0.90[ASN][1000 genomes]
rs979992	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs7902237	PDZD8	cis	lymphoblastoid	seeQTL
rs7902237	PDZD8	cis	Artery Aorta	GTEx
rs7902237	PDZD8	cis	Artery Tibial	GTEx
rs7902237	PDZD8	Cis_1M	lymphoblastoid	RTeQTL
rs7902237	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL
rs7902237	SLC18A2	cis	Muscle Skeletal	GTEx
rs7902237	KIAA1598	cis	cerebellum	SCAN
rs7902237	SLC18A2	cis	Artery Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119138800-119142200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:119140600-119142000	Weak transcription	K562	blood

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