Variant report

Variant	rs7904886
Chromosome Location	chr10:50509238-50509239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr10:50506480-50509331	K562	blood:	n/a	n/a
2	HDAC2	chr10:50508491-50509270	K562	blood:	n/a	n/a
3	RAD21	chr10:50507440-50509485	SK-N-SH	brain:	n/a	chr10:50509161-50509180
4	NR2F2	chr10:50507794-50509266	K562	blood:	n/a	n/a
5	POLR2A	chr10:50505984-50509599	K562	blood:	n/a	n/a
6	MAZ	chr10:50506195-50509256	K562	blood:	n/a	n/a
7	CBX3	chr10:50506670-50509246	K562	blood:	n/a	n/a
8	BHLHE40	chr10:50507016-50509408	K562	blood:	n/a	n/a
9	JUND	chr10:50506718-50509266	K562	blood:	n/a	chr10:50507930-50507940
10	EP300	chr10:50507055-50509765	SK-N-SH	brain:	n/a	n/a
11	ELF1	chr10:50508487-50509297	K562	blood:	n/a	chr10:50508639-50508650

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50384432..50385996-chr10:50507928..50509644,2	K562	blood:
2	chr10:50322533..50324257-chr10:50507150..50509486,2	K562	blood:
3	chr10:50384969..50387621-chr10:50504946..50509741,4	K562	blood:
4	chr10:50451424..50453022-chr10:50507349..50510137,2	K562	blood:
5	chr10:50467089..50469467-chr10:50508943..50510857,2	K562	blood:
6	chr10:50361956..50364273-chr10:50509060..50511829,2	K562	blood:
7	chr10:50477578..50479139-chr10:50508412..50510306,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2377950	1.00[EUR][1000 genomes]
rs4253172	1.00[EUR][1000 genomes]
rs4253177	1.00[EUR][1000 genomes]
rs4253194	1.00[EUR][1000 genomes]
rs4838511	1.00[EUR][1000 genomes]
rs7923767	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50504800-50511200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:50505800-50509600	Flanking Active TSS	K562	blood
3	chr10:50507200-50511200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:50507200-50511400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:50507400-50513800	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
6	chr10:50507600-50509800	Enhancers	Placenta	Placenta
7	chr10:50507600-50511200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:50507800-50511800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:50508000-50509400	Flanking Active TSS	Fetal Heart	heart
10	chr10:50508200-50511200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:50508600-50509400	Flanking Active TSS	Left Ventricle	heart
12	chr10:50508800-50510400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr10:50508800-50514400	Enhancers	Psoas Muscle	Psoas
14	chr10:50509000-50509400	Flanking Active TSS	Right Atrium	heart
15	chr10:50509000-50509600	Enhancers	Fetal Muscle Leg	muscle
16	chr10:50509200-50509800	Weak transcription	Spleen	Spleen
17	chr10:50509200-50510400	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:50509200-50515400	Enhancers	Right Ventricle	heart
19	chr10:50509200-50517000	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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