Variant report

Variant	rs7906944
Chromosome Location	chr10:52968135-52968136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10740166	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10996069	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1871631	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1904700	0.83[JPT][hapmap]
rs7897633	0.92[ASN][1000 genomes]
rs7905063	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7911676	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9415777	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9415788	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7906944	PRKG1	cis	parietal	SCAN
rs7906944	ARHGAP22	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52950400-52975800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:52958800-52975600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:52961600-52968200	Weak transcription	Aorta	Aorta
4	chr10:52964600-52973600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:52964600-52974400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:52964800-52974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:52965200-52968400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:52966400-52969800	Enhancers	Colon Smooth Muscle	Colon
9	chr10:52966800-52968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:52966800-52969200	Enhancers	Rectal Smooth Muscle	rectum
11	chr10:52967400-52968800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:52967400-52969200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:52967400-52974200	Weak transcription	Psoas Muscle	Psoas
14	chr10:52968000-52969800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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