Variant report

Variant	rs7909861
Chromosome Location	chr10:119118403-119118404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11815112	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816871	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12256256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12337	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17545115	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545387	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17546173	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17627160	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17627569	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs17628116	0.82[EUR][1000 genomes]
rs61865312	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865314	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865317	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067870	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100905	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900213	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902117	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908406	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917325	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924178	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7909861	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119082400-119118600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
4	chr10:119102600-119119000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:119102800-119119600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:119102800-119123600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:119105000-119119600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:119107200-119131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:119109400-119130000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:119111000-119124600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:119111800-119129000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:119112600-119123600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:119112600-119132800	Weak transcription	Gastric	stomach
14	chr10:119113800-119119800	Weak transcription	Brain Anterior Caudate	brain
15	chr10:119114000-119119200	Weak transcription	HMEC	breast
16	chr10:119114000-119123200	Weak transcription	Small Intestine	intestine
17	chr10:119114200-119119600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:119114200-119120800	Weak transcription	GM12878-XiMat	blood
19	chr10:119114200-119122600	Weak transcription	Brain Germinal Matrix	brain
20	chr10:119114200-119128200	Weak transcription	Thymus	Thymus
21	chr10:119114600-119119800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:119114800-119123400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr10:119115000-119119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr10:119115200-119119000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:119115200-119119600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:119115200-119119600	Weak transcription	Stomach Mucosa	stomach
27	chr10:119115200-119119800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr10:119115200-119119800	Weak transcription	Colon Smooth Muscle	Colon
29	chr10:119115200-119122000	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:119115200-119122400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:119115200-119122600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:119115200-119122600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:119115200-119122600	Weak transcription	Primary B cells from cord blood	blood
34	chr10:119115200-119123400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr10:119115200-119126600	Weak transcription	Fetal Thymus	thymus
36	chr10:119115400-119119600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:119115400-119119600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr10:119115400-119119800	Weak transcription	Fetal Heart	heart
39	chr10:119115400-119119800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:119115400-119120000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:119115400-119120400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:119115400-119120600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr10:119115400-119122600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:119115400-119123200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:119115600-119122600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:119116000-119119400	Weak transcription	HSMM	muscle
47	chr10:119116000-119119600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr10:119116200-119121000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr10:119116200-119125000	Weak transcription	Dnd41	blood
50	chr10:119116400-119119400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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