Variant report

Variant	rs7910114
Chromosome Location	chr10:50953830-50953831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11101224	0.94[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11101225	1.00[ASN][1000 genomes]
rs11101226	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083255	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2304635	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304636	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2304637	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2889728	0.86[ASN][1000 genomes]
rs3750757	0.94[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7073860	0.90[CHD][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap]
rs7099245	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs751595	0.84[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7893806	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv895378	chr10:50801342-50955649	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1048905	chr10:50928727-51019190	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3401087	chr10:50948446-50954144	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7910114	OGDHL	Cis_1M	lymphoblastoid	RTeQTL
rs7910114	OGDHL	cis	Skin Sun Exposed Lower leg	GTEx
rs7910114	RSPRY1	trans	cerebellum	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50940600-50966000	Strong transcription	Liver	Liver
2	chr10:50941200-50965400	Weak transcription	Brain Germinal Matrix	brain
3	chr10:50943000-50956400	Strong transcription	Brain Anterior Caudate	brain
4	chr10:50943200-50969400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:50943400-50956200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:50943800-50956000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:50944000-50969400	Weak transcription	Brain Substantia Nigra	brain
8	chr10:50946200-50955200	Weak transcription	Fetal Brain Female	brain
9	chr10:50947800-50960400	Strong transcription	Brain Angular Gyrus	brain
10	chr10:50948000-50956600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:50948600-50955600	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:50948800-50956600	Strong transcription	Brain Inferior Temporal Lobe	brain
13	chr10:50949600-50956200	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:50950000-50954800	Weak transcription	Spleen	Spleen
15	chr10:50950000-50955000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:50950200-50954600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:50950400-50955600	Strong transcription	Fetal Intestine Small	intestine
18	chr10:50950600-50955600	Strong transcription	H9 Cell Line	embryonic stem cell
19	chr10:50950800-50955200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:50951000-50955600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:50951600-50955200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:50951600-50955600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:50951600-50969200	Weak transcription	Fetal Intestine Large	intestine
24	chr10:50951800-50955400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:50952400-50956600	Strong transcription	Brain Cingulate Gyrus	brain
26	chr10:50952600-50968800	Weak transcription	Pancreas	Pancrea
27	chr10:50952800-50954600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr10:50953400-50954200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:50953400-50954200	Weak transcription	Ovary	ovary
30	chr10:50953400-50955000	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr10:50953400-50969400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:50953600-50954200	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:50953800-50955400	Strong transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links