Variant report

Variant	rs7912628
Chromosome Location	chr10:52843616-52843617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10508935	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10740111	0.84[EUR][1000 genomes]
rs10740130	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761738	0.91[EUR][1000 genomes]
rs10761807	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761831	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10822188	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10822189	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10822194	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10822197	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10822198	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10822210	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10822211	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10822229	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10995458	0.91[EUR][1000 genomes]
rs10995473	0.86[EUR][1000 genomes]
rs10995526	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10995617	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10995620	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10995651	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10995655	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10995788	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10995790	0.82[ASN][1000 genomes]
rs12218335	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220644	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12221226	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12415785	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12767015	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913257	0.91[EUR][1000 genomes]
rs16913900	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16913956	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1983222	0.88[EUR][1000 genomes]
rs2339675	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2660202	0.91[EUR][1000 genomes]
rs2666543	0.90[EUR][1000 genomes]
rs2879544	0.81[EUR][1000 genomes]
rs3964605	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4622210	0.84[EUR][1000 genomes]
rs55767509	0.91[EUR][1000 genomes]
rs7074892	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084128	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7084767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097311	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299457	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414805	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9414806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414807	0.81[EUR][1000 genomes]
rs9414808	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414809	0.82[EUR][1000 genomes]
rs9414810	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415709	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415710	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415711	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633564	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52836400-52847400	Weak transcription	Right Ventricle	heart
2	chr10:52837200-52849600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:52839000-52844000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:52840400-52852200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:52842000-52844600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:52842600-52843800	Active TSS	Stomach Smooth Muscle	stomach
7	chr10:52842600-52844000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:52842600-52844000	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:52842600-52844200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr10:52842800-52843800	Enhancers	NHLF	lung
11	chr10:52842800-52844000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:52842800-52844000	Enhancers	Fetal Intestine Large	intestine
13	chr10:52842800-52844000	Enhancers	Fetal Intestine Small	intestine
14	chr10:52842800-52844000	Enhancers	Fetal Stomach	stomach
15	chr10:52843000-52844200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:52843000-52849600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:52843400-52843800	Enhancers	Fetal Lung	lung
18	chr10:52843400-52844000	Enhancers	Fetal Kidney	kidney
19	chr10:52843600-52843800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr10:52843600-52844000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr10:52843600-52844000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr10:52843600-52844000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:52843600-52844000	Enhancers	Colon Smooth Muscle	Colon
24	chr10:52843600-52844200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr10:52843600-52845000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:52843600-52845200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:52843600-52845400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:52843600-52856200	Weak transcription	Aorta	Aorta

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