Variant report

Variant	rs7912976
Chromosome Location	chr10:25621047-25621048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10159703	1.00[EUR][1000 genomes]
rs10828809	1.00[EUR][1000 genomes]
rs12259717	1.00[EUR][1000 genomes]
rs12267402	1.00[EUR][1000 genomes]
rs7085469	1.00[EUR][1000 genomes]
rs73608263	1.00[EUR][1000 genomes]
rs73608302	1.00[EUR][1000 genomes]
rs7907745	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7907884	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7915434	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25619200-25622000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr10:25619800-25621800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:25620400-25622000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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