Variant report

Variant	rs7913408
Chromosome Location	chr10:52595115-52595116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10994600	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10994838	0.82[ASW][hapmap];0.88[CEU][hapmap];0.84[JPT][hapmap];0.86[MKK][hapmap];0.80[TSI][hapmap];0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7068127	0.84[ASW][hapmap];0.84[CEU][hapmap];0.87[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7913408	ASAH2	cis	Artery Tibial	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52576800-52597200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:52581600-52595800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:52585200-52617200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:52592800-52598000	Genic enhancers	Liver	Liver
6	chr10:52593200-52596200	Strong transcription	Fetal Intestine Large	intestine
7	chr10:52594200-52599400	Weak transcription	HepG2	liver
8	chr10:52594800-52617200	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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