Variant report

Variant	rs7913465
Chromosome Location	chr10:4203580-4203581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11252377	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12259410	0.96[EUR][1000 genomes]
rs4881298	1.00[CEU][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs4881300	0.89[EUR][1000 genomes]
rs4881301	0.84[GIH][hapmap]
rs59778746	0.86[EUR][1000 genomes]
rs68154769	0.89[EUR][1000 genomes]
rs7071854	0.89[EUR][1000 genomes]
rs7907648	0.82[MEX][hapmap]
rs7923955	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4203400-4203600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4203400-4203600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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