Variant report
| Variant | rs7916111 |
|---|---|
| Chromosome Location | chr10:50550494-50550495 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:50506642..50508301-chr10:50549565..50551309,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236208 | Chromatin interaction |
| ENSG00000177354 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10857468 | 0.94[ASN][1000 genomes] |
| rs12252168 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12414082 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12416329 | 0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12571426 | 0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12572137 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12573530 | 0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17176872 | 0.81[AFR][1000 genomes] |
| rs17176977 | 0.81[AFR][1000 genomes] |
| rs2377942 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34752051 | 0.94[ASN][1000 genomes] |
| rs34838288 | 0.94[ASN][1000 genomes] |
| rs59753859 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61848596 | 0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6537530 | 0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7923735 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895375 | chr10:50306386-51028871 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv534410 | chr10:50317458-50826916 | Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv895376 | chr10:50480164-50557211 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
