Variant report

Variant	rs7917098
Chromosome Location	chr10:52997355-52997356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10490973	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs10490974	1.00[JPT][hapmap]
rs10490975	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs10995547	1.00[CHB][hapmap]
rs10996317	1.00[JPT][hapmap]
rs10996318	1.00[JPT][hapmap]
rs10996319	1.00[JPT][hapmap]
rs10996321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10996323	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs10996325	1.00[JPT][hapmap]
rs10996327	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10996328	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs10996377	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs10996389	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs10996397	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs12245444	1.00[JPT][hapmap]
rs12247775	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs12250170	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12253079	1.00[JPT][hapmap]
rs12257728	1.00[EUR][1000 genomes]
rs12259761	1.00[JPT][hapmap]
rs12262817	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs5011544	1.00[CHB][hapmap]
rs61849745	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61849758	1.00[EUR][1000 genomes]
rs7085126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085957	1.00[EUR][1000 genomes]
rs7088380	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7476747	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	esv2757383	chr10:52995974-53015583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2759750	chr10:52995974-53015583	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7917098	TRIM48	trans	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52991200-53003000	Weak transcription	Left Ventricle	heart
2	chr10:52992000-53006200	Weak transcription	Aorta	Aorta
3	chr10:52992200-53003600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:52992200-53009600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:52992800-53002200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:52993000-52998000	Weak transcription	Psoas Muscle	Psoas
7	chr10:52993000-52998200	Weak transcription	Right Atrium	heart
8	chr10:52993000-53003200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:52994000-53003200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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