Variant report

Variant	rs7917325
Chromosome Location	chr10:119125217-119125218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:119109550..119117175-chr10:119118758..119125323,7	K562	blood:
2	chr10:119117567..119122447-chr10:119122723..119126609,5	K562	blood:
3	chr10:119117567..119122447-chr10:119122723..119126440,5	K562	blood:
4	chr10:119121724..119125606-chr10:119133257..119136561,5	K562	blood:
5	chr10:119079349..119081397-chr10:119125139..119127779,2	K562	blood:
6	chr10:119124009..119125919-chr10:119130332..119132038,2	K562	blood:
7	chr10:119120696..119122736-chr10:119123763..119126421,2	MCF-7	breast:
8	chr10:119124177..119125697-chr10:119127748..119130278,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction
ENSG00000222197	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11815112	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816871	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17545115	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545387	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17546173	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628116	0.82[EUR][1000 genomes]
rs61865312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865314	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865317	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900213	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902117	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908406	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909861	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924178	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7917325	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
3	chr10:119107200-119131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:119109400-119130000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:119111800-119129000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:119112600-119132800	Weak transcription	Gastric	stomach
7	chr10:119114200-119128200	Weak transcription	Thymus	Thymus
8	chr10:119115200-119126600	Weak transcription	Fetal Thymus	thymus
9	chr10:119119200-119126000	Weak transcription	Pancreas	Pancrea
10	chr10:119119200-119127200	Enhancers	NHEK	skin
11	chr10:119119400-119125400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:119119600-119127200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:119119800-119126200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr10:119120000-119130800	Weak transcription	Brain Anterior Caudate	brain
15	chr10:119120000-119132200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:119121000-119127200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:119121400-119130000	Enhancers	Fetal Intestine Large	intestine
18	chr10:119121600-119130600	Enhancers	HepG2	liver
19	chr10:119122400-119130000	Enhancers	Fetal Intestine Small	intestine
20	chr10:119122800-119126600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:119122800-119126800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr10:119123000-119128200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr10:119123000-119129200	Weak transcription	Brain Germinal Matrix	brain
24	chr10:119123200-119126600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr10:119123200-119127400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:119123400-119126600	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr10:119123600-119125800	Enhancers	Fetal Kidney	kidney
28	chr10:119123600-119126600	Enhancers	Hela-S3	cervix
29	chr10:119123600-119130400	Weak transcription	Brain Substantia Nigra	brain
30	chr10:119123800-119131000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:119123800-119131000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:119123800-119131600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:119124000-119126200	Enhancers	HUVEC	blood vessel
34	chr10:119124000-119128600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:119124000-119129000	Weak transcription	HSMM	muscle
36	chr10:119124000-119129200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:119124000-119129200	Weak transcription	NHDF-Ad	bronchial
38	chr10:119124000-119132000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:119124200-119125800	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr10:119124200-119126800	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr10:119124200-119127400	Enhancers	Primary hematopoietic stem cells	blood
42	chr10:119124200-119129000	Weak transcription	Fetal Brain Male	brain
43	chr10:119124200-119130000	Weak transcription	Adipose Nuclei	Adipose
44	chr10:119124200-119131000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr10:119124200-119131000	Weak transcription	Small Intestine	intestine
46	chr10:119124200-119131600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr10:119124400-119125400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:119124400-119126000	Enhancers	Duodenum Mucosa	Duodenum
49	chr10:119124400-119126000	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr10:119124400-119126200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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