Variant report

Variant	rs7922754
Chromosome Location	chr10:119113861-119113862
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:119113856-119113906	A549	lung:	n/a
2	chr10:119113856-119113906	AG09319	gingival:	n/a
3	chr10:119113856-119113906	GM12892	blood:	n/a
4	chr10:119113856-119113906	HCF	heart:	n/a
5	chr10:119113856-119113906	K562	blood:	n/a
6	chr10:119113856-119113906	CMK	blood:	n/a
7	chr10:119113856-119113906	ProgFib	skin:	n/a
8	chr10:119113856-119113906	HRE	kidney:	n/a
9	chr10:119113856-119113906	H1-hESC	embryonic stem cell:	embryo
10	chr10:119113856-119113906	HEEpiC	esophagus:	n/a
11	chr10:119113856-119113906	ovcar-3	ovarian:	n/a
12	chr10:119113856-119113906	HRCEpiC	kidney:	n/a
13	chr10:119113856-119113906	HRPEpiC	eye:	n/a
14	chr10:119113856-119113906	PrEC	prostate:	n/a
15	chr10:119113856-119113906	HCPEpiC	choroid plexus:	n/a
16	chr10:119113856-119113906	SK-N-SH_RA	brain:	n/a
17	chr10:119113856-119113906	Hepatocyte	liver:	n/a
18	chr10:119113856-119113906	IMR90	lung:	fetal
19	chr10:119113856-119113906	GM12878	blood:	n/a
20	chr10:119113856-119113906	GM12891	blood:	n/a
21	chr10:119113856-119113906	NHBE	bronchial:	n/a
22	chr10:119113856-119113906	AG04450	lung:	fetal
23	chr10:119113856-119113906	BE2_C	brain:	n/a
24	chr10:119113856-119113906	RPTEC	kidney:	n/a
25	chr10:119113856-119113906	GM06990	blood:	n/a
26	chr10:119113856-119113906	HNPCEpiC	eye:	n/a
27	chr10:119113856-119113906	SK-N-SH	brain:	n/a
28	chr10:119113856-119113906	PANC-1	pancreas:	n/a
29	chr10:119113856-119113906	HPAEpiC	pulmonary alveolar:	n/a
30	chr10:119113856-119113906	HIPEpiC	eye:	n/a
31	chr10:119113856-119113906	HCM	heart:	n/a
32	chr10:119113856-119113906	AoSMC	blood vessel:	n/a
33	chr10:119113856-119113906	HUVEC	blood vessel:	n/a
34	chr10:119113856-119113906	MCF-7	breast:	n/a
35	chr10:119113856-119113906	SK-N-MC	brain:	n/a
36	chr10:119113856-119113906	HAEpiC	amniotic membrane:	n/a
37	chr10:119113856-119113906	SKMC	muscle:	n/a
38	chr10:119113856-119113906	HEK293	kidney:	embryo
39	chr10:119113856-119113906	NHDF-neo	bronchial:	n/a
40	chr10:119113856-119113906	BJ	skin:	n/a
41	chr10:119113856-119113906	NH-A	brain:	n/a
42	chr10:119113856-119113906	HCT-116	colon:	n/a
43	chr10:119113856-119113906	LNCaP	prostate:	n/a
44	chr10:119113856-119113906	HepG2	liver:	n/a
45	chr10:119113856-119113906	AG04449	skin:	fetal
46	chr10:119113856-119113906	MCF10A-Er-Src	breast:	n/a
47	chr10:119113856-119113906	AG10803	skin:	n/a
48	chr10:119113856-119113906	SAEC	small airway:	n/a
49	chr10:119113856-119113906	Jurkat	blood:	n/a
50	chr10:119113856-119113906	T-47D	breast:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:119112310..119114001-chr10:119126001..119128034,2	K562	blood:
2	chr10:119109550..119117175-chr10:119118758..119125323,7	K562	blood:
3	chr10:119111589..119113973-chr10:119122472..119125164,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000222197	CpG island

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11812488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12098832	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2532791	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2794437	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3026066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3026074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363270	0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363293	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363302	0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363412	1.00[EUR][1000 genomes]
rs363415	1.00[EUR][1000 genomes]
rs57748965	1.00[EUR][1000 genomes]
rs58435860	1.00[EUR][1000 genomes]
rs58524185	1.00[EUR][1000 genomes]
rs61093869	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7069306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7071623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7078973	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7083451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7086562	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7088012	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389862	1.00[EUR][1000 genomes]
rs73389865	1.00[EUR][1000 genomes]
rs73389875	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74159161	1.00[EUR][1000 genomes]
rs74159164	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74162303	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7919034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9943329	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119082400-119118600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:119097000-119114600	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:119099800-119114800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:119100000-119114800	Weak transcription	Fetal Heart	heart
5	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:119102400-119114600	Weak transcription	Spleen	Spleen
7	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
8	chr10:119102600-119119000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:119102800-119119600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:119102800-119123600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:119105000-119115000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:119105000-119118400	Weak transcription	Ovary	ovary
13	chr10:119105000-119119600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:119107200-119116200	Weak transcription	Fetal Intestine Small	intestine
15	chr10:119107200-119131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:119108000-119114000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:119108200-119114200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:119108800-119114800	Weak transcription	Stomach Mucosa	stomach
19	chr10:119109000-119114200	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:119109400-119130000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:119110600-119115200	Enhancers	K562	blood
22	chr10:119110600-119115400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr10:119111000-119114000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr10:119111000-119115200	Enhancers	Primary T cells from cord blood	blood
25	chr10:119111000-119116600	Enhancers	A549	lung
26	chr10:119111000-119124600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:119111400-119115000	Weak transcription	Aorta	Aorta
28	chr10:119111600-119115200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr10:119111600-119115400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr10:119111600-119116000	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr10:119111800-119115400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr10:119111800-119115400	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr10:119111800-119116200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:119111800-119129000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:119112000-119115200	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr10:119112000-119115400	Enhancers	Primary hematopoietic stem cells	blood
37	chr10:119112000-119115400	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr10:119112000-119115600	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr10:119112200-119114000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:119112200-119115200	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr10:119112200-119115200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr10:119112200-119115200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:119112200-119115200	Enhancers	Liver	Liver
44	chr10:119112400-119114000	Enhancers	Small Intestine	intestine
45	chr10:119112600-119114600	Weak transcription	Pancreas	Pancrea
46	chr10:119112600-119115000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:119112600-119115000	Weak transcription	Left Ventricle	heart
48	chr10:119112600-119115200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr10:119112600-119115600	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr10:119112600-119123600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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