Variant report

Variant	rs7924178
Chromosome Location	chr10:119129895-119129896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:119129127..119131284-chr10:119133057..119134797,2	MCF-7	breast:
2	chr10:119090115..119092747-chr10:119129531..119131567,2	MCF-7	breast:
3	chr10:119129524..119131714-chr10:119168378..119170724,2	K562	blood:
4	chr10:119124177..119125697-chr10:119127748..119130278,2	K562	blood:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11815112	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816871	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17545115	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545387	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17546173	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628116	0.82[EUR][1000 genomes]
rs61865312	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865314	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865317	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067870	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100905	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900213	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902117	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908406	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909861	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917325	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7924178	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
3	chr10:119107200-119131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:119109400-119130000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:119112600-119132800	Weak transcription	Gastric	stomach
6	chr10:119120000-119130800	Weak transcription	Brain Anterior Caudate	brain
7	chr10:119120000-119132200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:119121400-119130000	Enhancers	Fetal Intestine Large	intestine
9	chr10:119121600-119130600	Enhancers	HepG2	liver
10	chr10:119122400-119130000	Enhancers	Fetal Intestine Small	intestine
11	chr10:119123600-119130400	Weak transcription	Brain Substantia Nigra	brain
12	chr10:119123800-119131000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:119123800-119131000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:119123800-119131600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:119124000-119132000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:119124200-119130000	Weak transcription	Adipose Nuclei	Adipose
17	chr10:119124200-119131000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:119124200-119131000	Weak transcription	Small Intestine	intestine
19	chr10:119124200-119131600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:119124400-119130000	Weak transcription	Fetal Heart	heart
21	chr10:119124400-119130800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:119124400-119130800	Enhancers	Liver	Liver
23	chr10:119124400-119130800	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:119124400-119130800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:119124400-119130800	Weak transcription	Spleen	Spleen
26	chr10:119124400-119131000	Weak transcription	NHLF	lung
27	chr10:119124400-119131200	Weak transcription	Colonic Mucosa	Colon
28	chr10:119124400-119131400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:119124400-119132000	Weak transcription	Right Ventricle	heart
30	chr10:119124600-119130600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:119124600-119131400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:119124800-119130800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:119124800-119131800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr10:119125000-119130400	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr10:119125200-119131600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:119125400-119130000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr10:119125400-119131400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:119125800-119130400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr10:119125800-119131000	Weak transcription	NH-A	brain
40	chr10:119126200-119131000	Weak transcription	Right Atrium	heart
41	chr10:119126200-119131000	Weak transcription	HUVEC	blood vessel
42	chr10:119126400-119131400	Weak transcription	Fetal Kidney	kidney
43	chr10:119126600-119130000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:119126600-119130400	Weak transcription	Fetal Lung	lung
45	chr10:119126600-119131400	Weak transcription	Primary T cells from cord blood	blood
46	chr10:119126600-119131400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:119126800-119130800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr10:119126800-119132800	Weak transcription	Lung	lung
49	chr10:119127000-119130000	Weak transcription	Fetal Stomach	stomach
50	chr10:119127000-119130800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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