Variant report

Variant	rs7924401
Chromosome Location	chr11:46635695-46635696
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46613853..46617362-chr11:46635690..46640935,4	K562	blood:
2	chr11:46612073..46617371-chr11:46634890..46640526,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110497	Chromatin interaction

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10160701	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10838602	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038897	0.92[EUR][1000 genomes]
rs11038900	0.90[EUR][1000 genomes]
rs11038906	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038914	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038919	0.91[EUR][1000 genomes]
rs11038927	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11819869	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12272795	0.86[EUR][1000 genomes]
rs12283172	0.92[EUR][1000 genomes]
rs12292425	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295266	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12573978	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12574250	0.88[EUR][1000 genomes]
rs12574259	0.83[EUR][1000 genomes]
rs12574668	0.89[EUR][1000 genomes]
rs12574918	0.81[EUR][1000 genomes]
rs12575519	0.90[EUR][1000 genomes]
rs12576115	0.87[EUR][1000 genomes]
rs12576317	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12576359	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12577142	0.89[EUR][1000 genomes]
rs12578042	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1472001	0.90[EUR][1000 genomes]
rs1489192	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16938506	0.92[EUR][1000 genomes]
rs2046768	0.92[EUR][1000 genomes]
rs2067482	0.92[EUR][1000 genomes]
rs2171667	0.92[EUR][1000 genomes]
rs2171668	0.92[EUR][1000 genomes]
rs2279465	0.92[EUR][1000 genomes]
rs2291487	0.92[EUR][1000 genomes]
rs2864072	0.92[EUR][1000 genomes]
rs2864076	0.92[EUR][1000 genomes]
rs2902858	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34406563	0.88[EUR][1000 genomes]
rs35324223	0.80[EUR][1000 genomes]
rs35623865	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740974	0.92[EUR][1000 genomes]
rs3740977	0.91[EUR][1000 genomes]
rs3802888	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4307676	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4319473	0.82[EUR][1000 genomes]
rs4423142	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55657382	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55661562	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55896955	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56349329	0.85[EUR][1000 genomes]
rs57535407	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57739486	0.81[EUR][1000 genomes]
rs57744667	0.85[EUR][1000 genomes]
rs58147945	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59319338	0.89[EUR][1000 genomes]
rs60722866	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60932698	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882678	0.84[EUR][1000 genomes]
rs61882682	0.90[EUR][1000 genomes]
rs61882683	0.85[EUR][1000 genomes]
rs61882691	0.92[EUR][1000 genomes]
rs61882701	0.92[EUR][1000 genomes]
rs61882702	0.92[EUR][1000 genomes]
rs61882706	0.91[EUR][1000 genomes]
rs61882709	0.92[EUR][1000 genomes]
rs61882710	0.92[EUR][1000 genomes]
rs61882711	0.92[EUR][1000 genomes]
rs61882712	0.90[EUR][1000 genomes]
rs61882720	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882743	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882746	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882748	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882750	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882756	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882757	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882758	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884262	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884264	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884271	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884273	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884274	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884292	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61884295	0.85[EUR][1000 genomes]
rs61884301	0.80[EUR][1000 genomes]
rs6485682	0.92[EUR][1000 genomes]
rs6485685	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7108770	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109698	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7112229	0.90[EUR][1000 genomes]
rs7122039	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125907	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126316	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7126343	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7127529	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7128092	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7130141	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73449983	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7481312	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7484002	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926389	0.83[EUR][1000 genomes]
rs7930103	0.90[EUR][1000 genomes]
rs7932866	0.80[EUR][1000 genomes]
rs7936413	0.92[EUR][1000 genomes]
rs7946705	0.92[EUR][1000 genomes]
rs7951579	0.92[EUR][1000 genomes]
rs7951870	0.91[EUR][1000 genomes]
rs876701	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1046990	chr11:46501436-46669636	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv541031	chr11:46501436-46669636	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv897321	chr11:46515902-46673344	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46615600-46636800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:46615800-46637000	Weak transcription	Esophagus	oesophagus
3	chr11:46615800-46638400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:46616000-46637000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:46616000-46638400	Weak transcription	Aorta	Aorta
6	chr11:46616200-46637000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:46616200-46637200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:46616200-46637200	Weak transcription	HMEC	breast
9	chr11:46616200-46637400	Weak transcription	Right Ventricle	heart
10	chr11:46616200-46637400	Weak transcription	Thymus	Thymus
11	chr11:46616200-46638000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:46616200-46638000	Weak transcription	Right Atrium	heart
13	chr11:46616200-46638400	Weak transcription	Spleen	Spleen
14	chr11:46616400-46637000	Weak transcription	A549	lung
15	chr11:46616400-46637400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:46616400-46637600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:46616400-46637600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:46616400-46637800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:46616400-46638000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:46619200-46638000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:46619400-46638000	Weak transcription	Small Intestine	intestine
22	chr11:46619600-46637200	Weak transcription	HSMM	muscle
23	chr11:46619800-46637400	Weak transcription	NH-A	brain
24	chr11:46622800-46637200	Weak transcription	NHDF-Ad	bronchial
25	chr11:46623000-46637200	Weak transcription	Osteobl	bone
26	chr11:46623800-46637800	Weak transcription	Fetal Brain Male	brain
27	chr11:46625400-46637000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:46625400-46637000	Weak transcription	Lung	lung
29	chr11:46625400-46637200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:46625400-46637200	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:46625400-46637200	Weak transcription	HSMMtube	muscle
32	chr11:46625400-46637400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:46625400-46637400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:46625400-46637400	Weak transcription	Fetal Stomach	stomach
35	chr11:46625400-46637600	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:46625400-46637600	Weak transcription	Fetal Kidney	kidney
37	chr11:46625400-46637800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr11:46625400-46637800	Weak transcription	Primary B cells from cord blood	blood
39	chr11:46625400-46637800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:46625400-46638000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:46625400-46638000	Weak transcription	Adipose Nuclei	Adipose
42	chr11:46625400-46638200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:46625400-46638200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr11:46625600-46637000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:46625600-46637200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr11:46625600-46637200	Weak transcription	Liver	Liver
47	chr11:46625600-46637600	Weak transcription	Primary T cells from cord blood	blood
48	chr11:46625600-46637800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:46625800-46637200	Weak transcription	Gastric	stomach
50	chr11:46625800-46637800	Weak transcription	Monocytes-CD14+_RO01746	blood

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