Variant report

Variant	rs7924613
Chromosome Location	chr11:76568902-76568903
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr11:76568752-76569497	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76551001..76553533-chr11:76566118..76568951,2	K562	blood:
2	chr11:76566306..76569293-chr11:76569398..76571273,2	K562	blood:

Variant related genes	Relation type
ACER3	TF binding region

Extended variants
information (count: 198 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:198)

rs_ID	r²[population]
rs10431181	0.93[CEU][hapmap]
rs10736811	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10736812	0.93[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.88[ASN][1000 genomes]
rs10751263	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10751264	0.93[CEU][hapmap]
rs10751267	0.93[CEU][hapmap]
rs10751268	0.87[CEU][hapmap]
rs10751270	0.88[ASN][1000 genomes]
rs10751271	0.88[ASN][1000 genomes]
rs10793201	0.85[EUR][1000 genomes]
rs10793212	0.93[CEU][hapmap]
rs10793213	0.93[CEU][hapmap]
rs10793214	0.93[CEU][hapmap]
rs10793215	0.93[CEU][hapmap]
rs10793217	0.93[CEU][hapmap]
rs10793220	0.93[CEU][hapmap];0.88[TSI][hapmap]
rs10793223	0.87[CEU][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.94[TSI][hapmap];0.91[ASN][1000 genomes]
rs10793224	0.88[ASN][1000 genomes]
rs10793225	0.88[ASN][1000 genomes]
rs10793226	0.88[ASN][1000 genomes]
rs10793227	0.93[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.88[ASN][1000 genomes]
rs10793228	0.88[ASN][1000 genomes]
rs10793229	0.93[CEU][hapmap];0.80[JPT][hapmap];0.93[YRI][hapmap];0.88[ASN][1000 genomes]
rs10793230	0.93[CEU][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs10793231	0.93[CEU][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.88[ASN][1000 genomes]
rs10793232	0.93[CEU][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs10899292	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10899294	0.85[EUR][1000 genomes]
rs10899295	0.85[EUR][1000 genomes]
rs10899298	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10899302	0.83[AMR][1000 genomes]
rs10899303	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899307	0.93[CEU][hapmap];0.81[AMR][1000 genomes]
rs10899310	0.93[CEU][hapmap];0.85[TSI][hapmap]
rs10899311	0.93[CEU][hapmap]
rs10899312	0.93[CEU][hapmap];0.82[AMR][1000 genomes]
rs10899313	0.93[CEU][hapmap]
rs10899315	0.93[CEU][hapmap]
rs10899328	0.93[CEU][hapmap]
rs10899329	0.93[CEU][hapmap]
rs10899333	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899340	0.93[CEU][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899341	0.93[CEU][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899343	0.88[ASN][1000 genomes]
rs10899344	0.82[CEU][hapmap];0.88[GIH][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs11236977	0.85[EUR][1000 genomes]
rs11237027	0.93[CEU][hapmap]
rs11237052	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12223659	0.93[CEU][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1225131	0.86[CEU][hapmap]
rs1225132	0.86[CEU][hapmap]
rs1225136	0.85[CEU][hapmap]
rs1225139	0.86[CEU][hapmap];0.88[GIH][hapmap]
rs1225140	0.86[CEU][hapmap]
rs1225141	0.85[CEU][hapmap]
rs12279946	0.85[ASN][1000 genomes]
rs12286501	0.85[ASN][1000 genomes]
rs12286600	0.85[ASN][1000 genomes]
rs12292156	0.93[CEU][hapmap];0.82[AMR][1000 genomes]
rs1235157	0.86[CEU][hapmap]
rs12718490	0.93[CEU][hapmap];0.85[TSI][hapmap]
rs12794575	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12796913	0.93[CEU][hapmap];0.85[TSI][hapmap]
rs1356455	0.93[CEU][hapmap];0.88[TSI][hapmap]
rs1372045	0.93[CEU][hapmap]
rs1372046	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1474087	0.93[CEU][hapmap];0.88[TSI][hapmap]
rs1517905	0.93[CEU][hapmap]
rs1517906	0.93[CEU][hapmap]
rs1517907	1.00[CEU][hapmap];0.84[CHD][hapmap];0.80[JPT][hapmap];0.91[ASN][1000 genomes]
rs1517908	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1517909	0.93[CEU][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1517910	0.88[ASN][1000 genomes]
rs1589126	0.93[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.90[TSI][hapmap];0.88[ASN][1000 genomes]
rs1607285	0.82[CEU][hapmap]
rs1607287	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1660579	0.86[CEU][hapmap];0.81[GIH][hapmap]
rs1816748	0.82[AMR][1000 genomes]
rs1850544	0.87[ASN][1000 genomes]
rs1878630	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1914599	0.93[CEU][hapmap]
rs1914600	0.93[CEU][hapmap]
rs1945083	0.93[CEU][hapmap];0.85[ASN][1000 genomes]
rs1945086	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1969315	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1973714	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1980204	0.93[CEU][hapmap]
rs1980205	0.93[CEU][hapmap]
rs2090524	0.88[ASN][1000 genomes]
rs2119456	0.93[CEU][hapmap]
rs2119457	0.93[CEU][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes]
rs2119458	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2156770	0.93[CEU][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2203755	0.93[CEU][hapmap]
rs2372386	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2372388	0.93[CEU][hapmap]
rs2826	0.93[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.87[ASN][1000 genomes]
rs3740764	0.88[ASN][1000 genomes]
rs3740765	0.93[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.88[ASN][1000 genomes]
rs3740767	0.93[CEU][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.94[TSI][hapmap];0.91[ASN][1000 genomes]
rs3781697	0.93[CEU][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs3824889	0.93[CEU][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3851191	0.88[ASN][1000 genomes]
rs3914687	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4145048	0.93[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs4379869	0.93[CEU][hapmap];0.91[TSI][hapmap]
rs4457775	1.00[CEU][hapmap]
rs4460836	0.93[CEU][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4471450	0.93[CEU][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes]
rs4488228	0.93[CEU][hapmap];0.88[TSI][hapmap]
rs4488229	0.93[CEU][hapmap]
rs4944128	0.92[CEU][hapmap]
rs4944132	0.93[CEU][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4944134	0.93[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.87[ASN][1000 genomes]
rs4945115	0.93[CEU][hapmap];0.83[AMR][1000 genomes]
rs4945116	0.93[CEU][hapmap]
rs4945124	0.93[CEU][hapmap]
rs4945127	0.80[ASN][1000 genomes]
rs4945129	0.93[CEU][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945131	0.87[ASN][1000 genomes]
rs4945132	1.00[CEU][hapmap];0.88[ASN][1000 genomes]
rs4945133	0.88[ASN][1000 genomes]
rs591043	0.86[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs6592671	0.93[CEU][hapmap]
rs6592675	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6592676	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6592677	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6592678	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592679	0.82[AMR][1000 genomes]
rs6592680	0.93[CEU][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes]
rs6592682	0.93[CEU][hapmap];0.82[AMR][1000 genomes]
rs6592683	0.93[CEU][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592684	0.93[CEU][hapmap]
rs6592687	0.93[CEU][hapmap]
rs6592689	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592690	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592691	0.93[CEU][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592692	0.86[ASN][1000 genomes]
rs6592693	0.85[ASN][1000 genomes]
rs6592694	0.88[ASN][1000 genomes]
rs7101593	0.93[CEU][hapmap]
rs7103308	0.93[CEU][hapmap];0.83[AMR][1000 genomes]
rs7103500	0.93[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7105694	0.88[ASN][1000 genomes]
rs7105895	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7106625	0.93[CEU][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7107505	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7110305	0.88[ASN][1000 genomes]
rs7110532	0.93[CEU][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7113282	0.93[CEU][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes]
rs7113290	1.00[CEU][hapmap];0.83[CHD][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs7113647	0.88[ASN][1000 genomes]
rs7113778	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7114827	0.93[CEU][hapmap]
rs7115092	0.82[AMR][1000 genomes]
rs7116513	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7116800	0.93[CEU][hapmap];0.83[AMR][1000 genomes]
rs7116872	0.85[EUR][1000 genomes]
rs7117545	0.93[CEU][hapmap];0.88[TSI][hapmap]
rs7117682	0.93[CEU][hapmap];0.88[TSI][hapmap]
rs7118762	0.93[CEU][hapmap];0.88[TSI][hapmap]
rs7119361	0.93[CEU][hapmap];0.81[CHD][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7119492	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7120215	0.93[CEU][hapmap];0.83[AMR][1000 genomes]
rs7121273	0.93[CEU][hapmap];0.80[JPT][hapmap];0.91[ASN][1000 genomes]
rs7121920	0.88[ASN][1000 genomes]
rs7123496	0.93[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs7123694	0.92[CEU][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs7123723	0.93[CEU][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs7127936	0.93[CEU][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs7128038	0.87[ASN][1000 genomes]
rs7129388	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7924888	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7925135	0.90[ASW][hapmap];1.00[CEU][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925652	0.93[CEU][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7925774	0.93[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.88[ASN][1000 genomes]
rs7926122	0.85[ASN][1000 genomes]
rs7926409	0.82[ASN][1000 genomes]
rs7927367	1.00[CEU][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7927658	0.93[CEU][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes]
rs7927731	0.93[CEU][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7931561	1.00[CEU][hapmap];0.84[CHD][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7931646	0.93[CEU][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7931869	0.93[CEU][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7931894	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932288	1.00[CEU][hapmap];0.84[CHD][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7933351	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7937883	0.93[CEU][hapmap];0.88[TSI][hapmap]
rs7940782	0.93[CEU][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7940972	0.90[ASN][1000 genomes]
rs7942574	0.93[CEU][hapmap];0.88[TSI][hapmap]
rs7943913	0.93[CEU][hapmap];0.91[GIH][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7951501	0.93[CEU][hapmap]
rs9326485	0.93[CEU][hapmap]
rs938810	0.93[CEU][hapmap];0.88[TSI][hapmap]
rs949339	0.93[CEU][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.85[ASN][1000 genomes]
rs949340	0.93[CEU][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs963704	0.93[CEU][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76549600-76570800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:76562000-76571200	Weak transcription	Adipose Nuclei	Adipose
4	chr11:76562000-76571400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:76562200-76570600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:76562200-76571000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:76562400-76569800	Weak transcription	Placenta	Placenta
8	chr11:76565400-76571400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:76566000-76569000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:76566000-76571000	Weak transcription	K562	blood
11	chr11:76566000-76571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:76566200-76571000	Weak transcription	NHEK	skin
13	chr11:76566600-76569800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:76566600-76571200	Weak transcription	Thymus	Thymus
15	chr11:76566600-76571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:76566800-76570000	Enhancers	GM12878-XiMat	blood
17	chr11:76566800-76570000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr11:76567200-76572000	Weak transcription	Lung	lung
19	chr11:76567400-76569000	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr11:76567400-76571200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:76567600-76571200	Weak transcription	HMEC	breast
22	chr11:76567800-76571400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:76567800-76571400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:76568000-76571400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:76568600-76569000	Weak transcription	Primary B cells from cord blood	blood
26	chr11:76568600-76570000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:76568600-76571400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr11:76568800-76569000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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