Variant report

Variant	rs7924699
Chromosome Location	chr11:47893120-47893121
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1017875	0.92[CEU][hapmap]
rs11039387	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11819979	0.88[ASN][1000 genomes]
rs11820480	0.91[ASN][1000 genomes]
rs17791016	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1872167	0.98[ASN][1000 genomes]
rs2305982	0.95[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs2305983	0.93[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2869531	0.95[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs2869532	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4752791	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4752805	0.86[CEU][hapmap]
rs4752871	0.94[ASN][1000 genomes]
rs4752872	0.90[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs4752877	0.98[ASN][1000 genomes]
rs4752879	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57436966	0.92[ASN][1000 genomes]
rs58357937	0.88[ASN][1000 genomes]
rs59205786	0.94[ASN][1000 genomes]
rs59652089	0.83[ASN][1000 genomes]
rs60515486	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6485772	0.87[ASN][1000 genomes]
rs6485774	0.95[CHB][hapmap];0.84[JPT][hapmap];0.97[MKK][hapmap];0.86[YRI][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6485783	0.95[CHB][hapmap];0.84[JPT][hapmap];0.97[ASN][1000 genomes]
rs6485784	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6485788	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7101582	0.87[EUR][1000 genomes]
rs7120737	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7121264	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7123436	0.93[CEU][hapmap]
rs7124949	0.94[ASN][1000 genomes]
rs7130876	0.86[CEU][hapmap]
rs7927611	0.94[ASN][1000 genomes]
rs7942031	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7945911	0.82[ASN][1000 genomes]
rs7952204	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
3	nsv1036992	chr11:47794621-48666024	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1049835	chr11:47837089-47928822	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv541036	chr11:47837089-47928822	Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv897326	chr11:47891334-48035474	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47891800-47895000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:47891800-47895600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:47892600-47893800	Enhancers	Hela-S3	cervix
4	chr11:47892800-47895000	Weak transcription	Primary B cells from cord blood	blood

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