Variant report

Variant	rs7925450
Chromosome Location	chr11:56351502-56351503
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10501355	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17546536	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17547207	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17547284	1.00[CEU][hapmap]
rs17547542	1.00[CEU][hapmap]
rs17547806	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap]
rs17548679	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17548700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17548819	1.00[CEU][hapmap]
rs17549606	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17627302	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17628586	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17628691	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17629033	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17629218	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17629804	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17629861	1.00[CEU][hapmap]
rs17630028	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs17630040	0.90[CEU][hapmap]
rs1807254	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1876924	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs1945237	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs1945262	1.00[CEU][hapmap]
rs55771448	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55874240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56078926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56163075	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56394926	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61901983	0.94[EUR][1000 genomes]
rs61902021	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61902022	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61902171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61902203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61902209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61902501	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61902503	1.00[AFR][1000 genomes]
rs61902504	1.00[AFR][1000 genomes]
rs61902863	0.95[EUR][1000 genomes]
rs61902883	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61902885	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61902915	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61902916	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61902921	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61903268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61903313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903315	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903316	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61903320	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903321	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61903347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61904062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61904063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61904064	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61904562	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61904563	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61904564	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61904565	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61904579	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61904584	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61904586	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61904587	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6591380	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7111634	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs7114870	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7121991	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7123108	1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs7126549	0.95[EUR][1000 genomes]
rs7130906	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7935533	1.00[CEU][hapmap]
rs7939771	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7951506	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv468576	chr11:56299930-56420029	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv555099	chr11:56299930-56420029	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2421725	chr11:56323407-56354044	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv523453	chr11:56324576-56366677	Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	nsv525637	chr11:56330546-56366677	Weak transcription Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
8	nsv1037096	chr11:56332750-56380919	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2760201	chr11:56332762-56368515	Weak transcription Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
10	esv3384407	chr11:56344917-56380827	Weak transcription Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
11	esv3398628	chr11:56344934-56380760	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv971951	chr11:56345170-56361311	Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links