Variant report

Variant	rs7925774
Chromosome Location	chr11:76732308-76732309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76730817..76732917-chr11:76734478..76737111,3	MCF-7	breast:
2	chr11:76731422..76735171-chr11:76748297..76752199,4	MCF-7	breast:
3	chr11:76732116..76734090-chr11:76752663..76755395,2	MCF-7	breast:
4	chr11:76730831..76733150-chr11:76741205..76743794,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198488	Chromatin interaction

Extended variants
information (count: 198 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:198)

rs_ID	r²[population]
rs10082568	0.80[EUR][1000 genomes]
rs10431154	0.80[EUR][1000 genomes]
rs10431181	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs10431182	0.80[EUR][1000 genomes]
rs10736811	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10736812	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751263	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10751264	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10751267	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10751268	0.94[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs10751270	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751271	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793211	0.80[EUR][1000 genomes]
rs10793212	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs10793213	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs10793214	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10793215	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10793217	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs10793220	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs10793221	0.81[EUR][1000 genomes]
rs10793223	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793224	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793225	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793226	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793227	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793228	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793231	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899303	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899307	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs10899310	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.91[TSI][hapmap]
rs10899311	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10899312	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs10899313	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10899315	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs10899327	0.80[EUR][1000 genomes]
rs10899328	1.00[CEU][hapmap];0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs10899329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes]
rs10899330	0.80[EUR][1000 genomes]
rs10899332	0.80[EUR][1000 genomes]
rs10899333	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899341	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899343	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899344	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11237027	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs11237031	0.81[EUR][1000 genomes]
rs11237035	0.80[EUR][1000 genomes]
rs11237052	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222825	0.80[EUR][1000 genomes]
rs12223659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1225139	0.88[GIH][hapmap]
rs12279946	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12286501	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12286600	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12292156	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs12718490	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.91[TSI][hapmap]
rs12794575	0.94[CEU][hapmap]
rs12796913	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[TSI][hapmap]
rs12807735	0.81[EUR][1000 genomes]
rs1356455	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs1356456	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1372045	0.88[CEU][hapmap]
rs1372046	0.94[CEU][hapmap]
rs1474087	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs1517905	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1517906	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs1517907	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1517908	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1517909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1517910	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1589126	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607285	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs1607287	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1660579	0.87[GIH][hapmap]
rs17135319	0.83[YRI][hapmap]
rs1816748	0.81[AFR][1000 genomes]
rs1850544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1878630	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1914599	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs1914600	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs1945083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1945086	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1969315	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1973714	0.92[ASN][1000 genomes]
rs1980204	1.00[CEU][hapmap]
rs1980205	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs2090524	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119456	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs2119457	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs2119458	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2156770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2203755	1.00[CEU][hapmap]
rs2372388	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs2826	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740765	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824889	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3851191	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3914687	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4145048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4379869	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs4457775	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs4460836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4471450	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap]
rs4488228	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap]
rs4488229	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4944128	1.00[CEU][hapmap]
rs4944131	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4944132	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944134	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945115	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4945116	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4945124	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs4945125	0.80[EUR][1000 genomes]
rs4945127	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4945129	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945131	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945133	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591043	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592671	0.88[CEU][hapmap]
rs6592676	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6592678	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6592679	0.81[AFR][1000 genomes]
rs6592680	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs6592682	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6592683	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592684	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6592687	1.00[CEU][hapmap];0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs6592689	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592690	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592692	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592693	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592694	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101593	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs7103308	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs7103500	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7105694	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106625	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap]
rs7107505	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7110305	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110532	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7110849	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7113282	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap]
rs7113290	0.94[CEU][hapmap];0.88[TSI][hapmap]
rs7113647	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113778	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7114827	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs7116800	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs7117545	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs7117682	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs7118762	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs7119361	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs7119492	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7120215	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs7121273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7121920	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122736	0.81[EUR][1000 genomes]
rs7123496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7127936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7128038	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7129147	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7129388	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7924613	0.93[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.88[ASN][1000 genomes]
rs7925135	0.94[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.88[ASN][1000 genomes]
rs7925652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7926122	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7926409	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7927367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7927658	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap]
rs7927731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7929837	0.82[AFR][1000 genomes]
rs7931561	0.94[CEU][hapmap];0.88[TSI][hapmap]
rs7931646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7931869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7931894	0.88[ASN][1000 genomes]
rs7932288	0.94[ASW][hapmap];0.94[CEU][hapmap];0.81[LWK][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap]
rs7933351	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs7937883	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[TSI][hapmap]
rs7940782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7940972	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942574	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7943913	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7950001	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7951501	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs9326485	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs938810	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs949339	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs949340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs963704	1.00[CEU][hapmap];0.83[CHB][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7925774	CAPN5	cis	parietal	SCAN
rs7925774	ACER3	cis	lymphoblastoid	seeQTL
rs7925774	SNORD15A	cis	cerebellum	SCAN
rs7925774	ACER3	cis	parietal	SCAN
rs7925774	LIPT2	cis	parietal	SCAN
rs7925774	ACER3	cis	cerebellum	SCAN

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76683000-76736400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:76689200-76734600	Weak transcription	Liver	Liver
3	chr11:76689600-76737000	Weak transcription	Pancreas	Pancrea
4	chr11:76690000-76735800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:76690200-76736800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:76690400-76734600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:76693800-76734800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr11:76694000-76738600	Weak transcription	HSMMtube	muscle
9	chr11:76696200-76738000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:76701200-76738400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:76702600-76736000	Weak transcription	Brain Substantia Nigra	brain
12	chr11:76705600-76735600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:76709600-76732400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:76709600-76733200	Weak transcription	Fetal Lung	lung
15	chr11:76711200-76734600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:76712200-76733600	Weak transcription	Psoas Muscle	Psoas
17	chr11:76716200-76734800	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr11:76716400-76739800	Weak transcription	Colonic Mucosa	Colon
19	chr11:76718000-76733600	Weak transcription	Right Ventricle	heart
20	chr11:76720000-76738000	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:76720400-76735600	Weak transcription	Primary B cells from cord blood	blood
22	chr11:76720400-76738000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:76720800-76732400	Weak transcription	Fetal Stomach	stomach
24	chr11:76720800-76736400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:76720800-76737200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:76722600-76736600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr11:76722600-76736600	Weak transcription	Spleen	Spleen
28	chr11:76722600-76740400	Weak transcription	Lung	lung
29	chr11:76722600-76741800	Weak transcription	Aorta	Aorta
30	chr11:76722600-76741800	Weak transcription	Gastric	stomach
31	chr11:76724000-76735000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:76725600-76732600	Strong transcription	Adipose Nuclei	Adipose
33	chr11:76726800-76735200	Weak transcription	NHDF-Ad	bronchial
34	chr11:76727000-76732800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:76727200-76735400	Weak transcription	Fetal Intestine Small	intestine
36	chr11:76727200-76736600	Weak transcription	Fetal Intestine Large	intestine
37	chr11:76727200-76740400	Weak transcription	Esophagus	oesophagus
38	chr11:76728200-76732400	Strong transcription	Placenta	Placenta
39	chr11:76728200-76733600	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:76728600-76735600	Weak transcription	GM12878-XiMat	blood
41	chr11:76729800-76733600	Strong transcription	Left Ventricle	heart
42	chr11:76730200-76738400	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:76730200-76738600	Weak transcription	Brain Angular Gyrus	brain
44	chr11:76730400-76734200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:76730600-76732400	Enhancers	HUVEC	blood vessel
46	chr11:76730600-76732600	Enhancers	HMEC	breast
47	chr11:76730600-76733000	Enhancers	Hela-S3	cervix
48	chr11:76730600-76733200	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:76730600-76734400	Enhancers	Stomach Mucosa	stomach
50	chr11:76730800-76732400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links