Variant report

Variant	rs7927658
Chromosome Location	chr11:76574326-76574327
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76573371..76575582-chr11:76628469..76631182,2	MCF-7	breast:
2	chr11:76573736..76576142-chr11:76577044..76578811,2	K562	blood:
3	chr11:76572318..76575156-chr11:76600227..76602502,2	K562	blood:
4	chr11:76478547..76482353-chr11:76570414..76574348,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254632	Chromatin interaction

Extended variants
information (count: 244 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:243)

rs_ID	r²[population]
rs10082568	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1025815	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10431154	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10431181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10431182	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10736811	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10736812	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap]
rs10751262	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751263	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10751264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751267	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10751268	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793201	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10793204	0.88[ASN][1000 genomes]
rs10793205	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10793206	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10793207	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10793209	0.87[ASN][1000 genomes]
rs10793210	0.83[ASN][1000 genomes]
rs10793211	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793216	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10793217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793218	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793219	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793221	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793223	0.94[CEU][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.94[TSI][hapmap]
rs10793227	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap]
rs10793229	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10793230	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap]
rs10793231	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[TSI][hapmap]
rs10793232	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10899292	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899294	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899295	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899297	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899301	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899302	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899303	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10899305	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899308	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899316	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899320	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899321	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899324	0.82[ASN][1000 genomes]
rs10899325	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899327	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899329	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899330	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899332	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899340	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs10899341	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];0.83[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs10899344	0.89[CEU][hapmap];0.84[CHB][hapmap];0.82[YRI][hapmap]
rs11236977	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236999	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11237023	0.89[ASN][1000 genomes]
rs11237025	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237029	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11237031	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237035	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237052	0.81[AFR][1000 genomes]
rs11533271	0.87[ASN][1000 genomes]
rs11535857	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11537264	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12222825	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12223659	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs1225132	0.89[GIH][hapmap]
rs1225140	0.89[GIH][hapmap]
rs12292156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1235157	0.89[GIH][hapmap]
rs12718490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12788158	0.88[ASN][1000 genomes]
rs12794575	0.94[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12796913	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12807735	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1356455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1356456	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1372045	0.88[CEU][hapmap];0.89[GIH][hapmap]
rs1372046	0.94[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1474087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1517905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1517906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1517907	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1517908	0.82[AFR][1000 genomes]
rs1517909	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs1589126	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.83[LWK][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap]
rs1607285	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1607287	0.81[AFR][1000 genomes]
rs1816748	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1907295	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1914599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1914600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945083	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1965151	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1980204	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1980205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1986000	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2043986	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2119456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2119457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2119458	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2156770	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs2165404	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2203755	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2372386	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2372388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2826	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.94[TSI][hapmap];0.82[YRI][hapmap]
rs3740765	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap]
rs3740767	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs3781697	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[YRI][hapmap]
rs3824889	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs3914687	0.82[AFR][1000 genomes]
rs4145048	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs4367972	0.85[ASN][1000 genomes]
rs4379869	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4457775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4460836	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs4471450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4479014	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4488228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4488229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4556574	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4586198	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4604914	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944128	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944129	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944132	1.00[CEU][hapmap]
rs4944134	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.94[TSI][hapmap];0.82[YRI][hapmap]
rs4945115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945118	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945119	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945125	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945129	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs4945132	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[YRI][hapmap]
rs55956901	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56955124	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs591043	0.88[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.85[TSI][hapmap]
rs603610	0.88[EUR][1000 genomes]
rs6592671	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592672	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592675	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592677	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6592678	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6592679	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592680	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592683	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6592684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592685	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592689	0.82[AFR][1000 genomes]
rs6592690	0.83[AFR][1000 genomes]
rs6592691	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7101593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7102485	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7103308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7103500	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7105895	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106611	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7106625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7107505	0.82[AFR][1000 genomes]
rs7110532	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.94[TSI][hapmap]
rs7110849	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7113282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7113290	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7113778	0.82[AFR][1000 genomes]
rs7114827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7115092	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7116513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7116872	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7117545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7117682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7118762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7119361	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7119492	0.81[AFR][1000 genomes]
rs7120215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7121273	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7122736	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7123496	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs7123694	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7123723	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7126666	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127936	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7128770	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7129147	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7129388	0.82[AFR][1000 genomes]
rs7924605	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7924613	0.93[CEU][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes]
rs7924888	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7925135	0.94[CEU][hapmap];0.83[CHB][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes]
rs7925652	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs7925774	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap]
rs7927367	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs7927731	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7929837	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7930307	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931561	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7931646	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs7931869	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs7931894	0.84[AMR][1000 genomes]
rs7932288	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7933248	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7940782	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs7942574	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7942646	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943913	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.84[LWK][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7947809	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7949041	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7951501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9326485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs938809	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs938810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs949339	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap]
rs949340	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs963704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs963705	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs964521	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9666315	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9666322	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9795148	0.81[ASN][1000 genomes]
rs9795229	0.86[ASN][1000 genomes]
rs9795281	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9795388	0.87[ASN][1000 genomes]
rs9795398	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7927658	ACER3	cis	cerebellum	SCAN
rs7927658	LIPT2	cis	parietal	SCAN
rs7927658	ACER3	cis	lymphoblastoid	seeQTL
rs7927658	CAPN5	cis	parietal	SCAN
rs7927658	ACER3	cis	parietal	SCAN

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76572600-76575200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr11:76572800-76574600	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:76572800-76579600	Weak transcription	Ovary	ovary
4	chr11:76572800-76596400	Weak transcription	Small Intestine	intestine
5	chr11:76573000-76574800	Enhancers	Primary hematopoietic stem cells	blood
6	chr11:76573000-76575200	Enhancers	Primary B cells from cord blood	blood
7	chr11:76573000-76575200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:76573000-76578200	Weak transcription	Aorta	Aorta
9	chr11:76573000-76578800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:76573000-76579200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:76573000-76579400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:76573000-76579600	Weak transcription	Lung	lung
13	chr11:76573000-76579800	Weak transcription	Gastric	stomach
14	chr11:76573000-76581800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:76573000-76582000	Weak transcription	HSMM	muscle
16	chr11:76573000-76582200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr11:76573000-76583000	Weak transcription	Fetal Stomach	stomach
18	chr11:76573000-76583600	Weak transcription	Esophagus	oesophagus
19	chr11:76573200-76574600	Enhancers	Placenta	Placenta
20	chr11:76573200-76574600	Enhancers	Dnd41	blood
21	chr11:76573200-76575000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:76573200-76575400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:76573200-76575800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr11:76573200-76577800	Weak transcription	Fetal Kidney	kidney
25	chr11:76573200-76578200	Weak transcription	Spleen	Spleen
26	chr11:76573200-76579400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:76573200-76580000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:76573200-76581400	Weak transcription	Fetal Brain Male	brain
29	chr11:76573200-76581800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:76573200-76582000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:76573200-76583000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:76573200-76583200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:76573200-76583600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:76573200-76591600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:76573200-76596600	Weak transcription	Right Ventricle	heart
36	chr11:76573200-76600400	Weak transcription	Primary T cells from cord blood	blood
37	chr11:76573200-76601400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:76573400-76574600	Enhancers	Brain Cingulate Gyrus	brain
39	chr11:76573400-76574600	Enhancers	K562	blood
40	chr11:76573400-76575400	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr11:76573400-76575400	Enhancers	Adipose Nuclei	Adipose
42	chr11:76573400-76575400	Enhancers	Brain Substantia Nigra	brain
43	chr11:76573400-76579000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:76573400-76579000	Weak transcription	Fetal Brain Female	brain
45	chr11:76573400-76579400	Weak transcription	Fetal Heart	heart
46	chr11:76573400-76579600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:76573400-76579600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:76573400-76579600	Weak transcription	Brain Germinal Matrix	brain
49	chr11:76573400-76579600	Weak transcription	Colonic Mucosa	Colon
50	chr11:76573400-76579600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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