Variant report

Variant	rs7928328
Chromosome Location	chr11:93709295-93709296
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1945782	1.00[EUR][1000 genomes]
rs2251782	1.00[EUR][1000 genomes]
rs2460068	1.00[EUR][1000 genomes]
rs2508574	1.00[EUR][1000 genomes]
rs2511408	1.00[EUR][1000 genomes]
rs58116509	1.00[EUR][1000 genomes]
rs592526	1.00[EUR][1000 genomes]
rs59276869	1.00[EUR][1000 genomes]
rs60611834	1.00[EUR][1000 genomes]
rs61285551	1.00[EUR][1000 genomes]
rs669937	1.00[EUR][1000 genomes]
rs683660	1.00[EUR][1000 genomes]
rs694307	1.00[EUR][1000 genomes]
rs7113934	1.00[EUR][1000 genomes]
rs73551201	1.00[EUR][1000 genomes]
rs73552919	1.00[EUR][1000 genomes]
rs73561150	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73561172	1.00[EUR][1000 genomes]
rs73563050	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73564781	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73564788	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73566804	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73566811	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73566818	1.00[EUR][1000 genomes]
rs73566826	1.00[EUR][1000 genomes]
rs73566837	1.00[EUR][1000 genomes]
rs73566842	1.00[EUR][1000 genomes]
rs73566869	1.00[EUR][1000 genomes]
rs73568841	1.00[EUR][1000 genomes]
rs73568844	1.00[EUR][1000 genomes]
rs73568854	1.00[EUR][1000 genomes]
rs73568863	1.00[EUR][1000 genomes]
rs7932900	1.00[AFR][1000 genomes]
rs7940306	1.00[EUR][1000 genomes]
rs7940598	1.00[EUR][1000 genomes]
rs7944971	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv442	chr11:93665117-93717973	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2757466	chr11:93676224-93714950	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759854	chr11:93676224-93714950	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93709000-93709800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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