Variant report

Variant	rs7928445
Chromosome Location	chr11:46784697-46784698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46777860..46782157-chr11:46783052..46787711,4	K562	blood:

Variant related genes	Relation type
ENSG00000252427	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10466476	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466477	1.00[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838634	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038985	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038987	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039012	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039015	1.00[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822959	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824327	0.88[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825434	0.88[CEU][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273360	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277006	0.86[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281784	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287376	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294921	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938534	0.88[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787930	0.88[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867206	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136433	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136434	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136436	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136439	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136443	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136446	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136448	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136467	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136468	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136469	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136472	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136478	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs3136480	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136481	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136482	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136485	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs3136487	0.82[EUR][1000 genomes]
rs3136489	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136496	0.83[EUR][1000 genomes]
rs3136500	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136504	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136521	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128315	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4500447	1.00[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311746	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331152	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57368576	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5898	1.00[CEU][hapmap];0.91[GIH][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59197251	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940896	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382645	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882744	1.00[ASN][1000 genomes]
rs61882755	1.00[ASN][1000 genomes]
rs61884270	1.00[ASN][1000 genomes]
rs61884294	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884297	1.00[ASN][1000 genomes]
rs61884303	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884304	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884305	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884306	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884307	1.00[ASN][1000 genomes]
rs61897302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897304	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897308	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898529	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898531	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899280	1.00[ASN][1000 genomes]
rs61899282	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899283	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899292	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485700	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485706	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102325	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102474	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105052	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105172	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105217	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106323	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108147	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111760	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111811	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112060	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112518	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115038	0.88[CEU][hapmap]
rs7115986	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118097	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120113	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122604	0.85[MKK][hapmap];0.83[YRI][hapmap]
rs7123729	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128102	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129622	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456126	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938960	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945548	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667108	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735937	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430382	chr11:46743135-46849360	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3388509	chr11:46763105-46818814	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46753000-46786600	Weak transcription	Right Atrium	heart
2	chr11:46760200-46786800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:46760200-46794800	Strong transcription	A549	lung
4	chr11:46760400-46795600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:46760600-46785800	Strong transcription	Fetal Stomach	stomach
6	chr11:46760600-46793800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:46761200-46787000	Strong transcription	Fetal Muscle Trunk	muscle
8	chr11:46761200-46787600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:46761400-46786600	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:46761400-46795800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:46761400-46840000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:46761400-46845200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:46761600-46787000	Strong transcription	Fetal Intestine Large	intestine
14	chr11:46761600-46824600	Strong transcription	Fetal Thymus	thymus
15	chr11:46762400-46787000	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr11:46762400-46794200	Strong transcription	Adipose Nuclei	Adipose
17	chr11:46762600-46785600	Strong transcription	Thymus	Thymus
18	chr11:46762600-46786400	Strong transcription	Fetal Brain Female	brain
19	chr11:46762600-46786600	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:46762600-46786800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:46762600-46786800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:46762600-46787000	Strong transcription	Fetal Muscle Leg	muscle
23	chr11:46762600-46793200	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr11:46762600-46794800	Strong transcription	Placenta	Placenta
25	chr11:46762600-46795200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:46762600-46795200	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:46762600-46795800	Strong transcription	Dnd41	blood
28	chr11:46762600-46804000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:46762600-46826000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:46762600-46841400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:46762800-46786000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:46762800-46786000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr11:46762800-46786000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr11:46762800-46786200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:46762800-46786800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:46762800-46786800	Strong transcription	Fetal Lung	lung
37	chr11:46762800-46787000	Strong transcription	H9 Cell Line	embryonic stem cell
38	chr11:46762800-46792600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr11:46762800-46794200	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:46762800-46794400	Strong transcription	HMEC	breast
41	chr11:46762800-46794800	Strong transcription	Hela-S3	cervix
42	chr11:46762800-46804800	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:46762800-46835600	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr11:46762800-46842400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr11:46763200-46786000	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:46763200-46795600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:46763400-46787800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:46763400-46839600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr11:46763600-46793200	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:46763600-46794200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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