Variant report

Variant	rs7928905
Chromosome Location	chr11:57012275-57012276
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57011184..57013387-chr11:57014609..57016452,2	K562	blood:
2	chr11:56894402..56895909-chr11:57012164..57014326,2	K562	blood:
3	chr11:57010853..57012684-chr11:57014374..57016452,2	K562	blood:
4	chr11:56992366..56994767-chr11:57010638..57012947,2	K562	blood:
5	chr11:56923234..56925283-chr11:57012223..57015017,2	K562	blood:
6	chr11:56888220..56889882-chr11:57010746..57012751,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10736682	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs10792079	0.83[EUR][1000 genomes]
rs10792083	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10792085	0.85[JPT][hapmap]
rs10896596	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896601	0.85[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs10896602	0.86[JPT][hapmap]
rs11228971	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11228988	0.81[ASN][1000 genomes]
rs11602501	0.85[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs12792781	0.90[JPT][hapmap]
rs17572970	0.82[JPT][hapmap]
rs17573746	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1893675	0.81[EUR][1000 genomes]
rs1939496	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2282623	1.00[YRI][hapmap]
rs3935069	0.88[ASN][1000 genomes]
rs4939129	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4939131	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4939132	0.90[JPT][hapmap]
rs5012051	0.90[JPT][hapmap]
rs522656	0.80[EUR][1000 genomes]
rs599947	0.90[EUR][1000 genomes]
rs7128371	0.82[JPT][hapmap]
rs7130020	0.80[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs746886	1.00[YRI][hapmap]
rs7931298	0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7936545	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7943761	0.81[ASN][1000 genomes]
rs7943915	0.89[ASN][1000 genomes]
rs7948723	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs948844	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs9943582	0.81[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57005200-57016400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:57008800-57016200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:57009600-57012800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:57009600-57016600	Weak transcription	Liver	Liver
5	chr11:57009800-57016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:57010000-57012800	Weak transcription	Gastric	stomach
7	chr11:57010000-57016400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:57010600-57012400	Enhancers	K562	blood
9	chr11:57010800-57012400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:57010800-57012400	Weak transcription	Right Ventricle	heart
11	chr11:57011000-57015000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:57011200-57012400	Weak transcription	Placenta	Placenta
13	chr11:57011400-57012400	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:57012000-57013200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr11:57012000-57013200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr11:57012000-57013400	Enhancers	Spleen	Spleen
17	chr11:57012200-57012600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr11:57012200-57013000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:57012200-57013000	Enhancers	Right Atrium	heart
20	chr11:57012200-57013200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:57012200-57013200	Enhancers	Adipose Nuclei	Adipose
22	chr11:57012200-57013200	Enhancers	Left Ventricle	heart
23	chr11:57012200-57013200	Enhancers	Lung	lung
24	chr11:57012200-57013200	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links