The 2.0 version of rSNPBase

Variant report

Variant rs7929688
Chromosome Location chr11:46982275-46982276
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:46959000-46982400 Weak transcription Primary T helper cells fromperipheralblood blood
2 chr11:46959000-46982600 Weak transcription Fetal Thymus thymus
3 chr11:46959000-46998600 Weak transcription Left Ventricle heart
4 chr11:46959200-46985000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr11:46959200-46990600 Weak transcription Brain Angular Gyrus brain
6 chr11:46959200-46990600 Weak transcription Brain Inferior Temporal Lobe brain
7 chr11:46959200-46993800 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr11:46965200-46984600 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr11:46970200-46983400 Weak transcription Placenta Amnion Placenta Amnion
10 chr11:46970600-46993200 Weak transcription Small Intestine intestine
11 chr11:46971000-46992400 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr11:46971600-46995600 Weak transcription Pancreas Pancrea
13 chr11:46971600-47006600 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr11:46974000-46989600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr11:46974200-46987400 Weak transcription HUES64 Cell Line embryonic stem cell
16 chr11:46974200-46998600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr11:46974200-47008400 Weak transcription Primary T cells from cord blood blood
18 chr11:46980000-46983400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr11:46980000-46984000 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
20 chr11:46980200-46983000 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
21 chr11:46980200-46983200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr11:46980200-46984800 Strong transcription Hela-S3 cervix
23 chr11:46980400-46982800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
24 chr11:46980400-46985800 Weak transcription Lung lung
25 chr11:46980400-46998600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr11:46980400-46998600 Weak transcription Thymus Thymus
27 chr11:46980600-46982600 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr11:46980600-46982800 Strong transcription A549 lung
29 chr11:46980600-46984200 Weak transcription Fetal Intestine Small intestine
30 chr11:46980600-46985600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr11:46980600-46990600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr11:46980600-46992600 Weak transcription Fetal Lung lung
33 chr11:46980600-46995400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr11:46980600-46995400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr11:46980600-46995400 Weak transcription Fetal Stomach stomach
36 chr11:46980600-46998600 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr11:46980600-46999600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr11:46980600-47014000 Weak transcription Aorta Aorta
39 chr11:46980600-47021000 Weak transcription Ovary ovary
40 chr11:46980600-47026000 Weak transcription HSMM muscle
41 chr11:46980800-46982600 Weak transcription HUES6 Cell Line embryonic stem cell
42 chr11:46980800-46982600 Weak transcription Fetal Intestine Large intestine
43 chr11:46981200-47023400 Weak transcription Primary B cells from peripheral blood blood
44 chr11:46981400-46997400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr11:46982000-46982800 ZNF genes & repeats Fetal Brain Female brain
46 chr11:46982200-46982600 ZNF genes & repeats hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr11:46982200-46983000 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr11:46982200-46983000 ZNF genes & repeats Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015