Variant report

Variant	rs7930318
Chromosome Location	chr11:60033371-60033372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:60032822..60033979-chr11:60101691..60102332,4	MCF-7	breast:
2	chr11:60032810..60033796-chr11:60252992..60253975,8	MCF-7	breast:
3	chr11:60032866..60033678-chr11:60386156..60387030,2	MCF-7	breast:
4	chr11:60033101..60034036-chr11:60236873..60237631,2	MCF-7	breast:
5	chr11:60033115..60033927-chr11:60253131..60253845,3	MCF-7	breast:
6	chr11:60033229..60033763-chr11:60252978..60253976,4	K562	blood:
7	chr11:60032789..60033679-chr11:60101235..60102123,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166926	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1019671	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1026252	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1026253	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1026254	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10736700	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10736701	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11230194	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11230201	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11601689	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11603507	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11826180	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1426250	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1426253	0.87[EUR][1000 genomes]
rs1562990	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1582763	0.83[EUR][1000 genomes]
rs1820428	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2015475	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2081547	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4492839	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4938932	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939320	0.87[EUR][1000 genomes]
rs56273223	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56357056	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs611418	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs636317	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs636341	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs672399	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7128450	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72920867	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs764859	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7928895	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7929589	0.87[EUR][1000 genomes]
rs7936120	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1053558	chr11:59979460-60061209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3435505	chr11:60006972-60051885	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60030800-60033400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:60033000-60033600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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