Variant report

Variant	rs7930424
Chromosome Location	chr11:47161647-47161648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47159555..47162446-chr11:47163043..47164716,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11039051	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs11039087	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272266	0.81[AMR][1000 genomes]
rs12288724	0.93[ASW][hapmap];0.95[LWK][hapmap];0.89[YRI][hapmap]
rs12293894	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4084459	0.81[AMR][1000 genomes]
rs4647707	0.93[YRI][hapmap]
rs60785687	0.87[AFR][1000 genomes]
rs60793721	1.00[AMR][1000 genomes]
rs6485729	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6485743	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7106654	0.96[YRI][hapmap]
rs7125863	1.00[AMR][1000 genomes]
rs7128520	1.00[YRI][hapmap]
rs73462094	0.89[AMR][1000 genomes]
rs73462095	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949025	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47141000-47164600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47143600-47164600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:47143600-47175200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:47145200-47164800	Weak transcription	Ovary	ovary
5	chr11:47145200-47174800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:47147600-47164200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:47148200-47164400	Weak transcription	NHEK	skin
8	chr11:47149000-47170400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:47149400-47173200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:47149600-47170400	Weak transcription	Esophagus	oesophagus
11	chr11:47149800-47164200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:47151200-47170600	Weak transcription	Gastric	stomach
13	chr11:47152800-47164600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:47153000-47164400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:47153000-47164400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:47153000-47164400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:47153000-47164400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:47153000-47174400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:47153400-47174800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:47155400-47164000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:47155400-47164600	Weak transcription	Pancreas	Pancrea
22	chr11:47155400-47170200	Weak transcription	Stomach Mucosa	stomach
23	chr11:47155600-47170200	Weak transcription	Small Intestine	intestine
24	chr11:47155600-47174400	Weak transcription	Fetal Brain Male	brain
25	chr11:47157200-47164200	Weak transcription	Placenta	Placenta
26	chr11:47157200-47164400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:47157400-47164000	Weak transcription	Fetal Kidney	kidney
28	chr11:47157600-47164400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:47157600-47170400	Weak transcription	Colonic Mucosa	Colon
30	chr11:47157800-47162400	Strong transcription	Fetal Intestine Small	intestine
31	chr11:47157800-47169800	Weak transcription	Brain Germinal Matrix	brain
32	chr11:47158000-47164400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr11:47158000-47174800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr11:47158600-47161800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:47158600-47161800	Strong transcription	Fetal Lung	lung
36	chr11:47158600-47164000	Weak transcription	HSMMtube	muscle
37	chr11:47158800-47165200	Weak transcription	Osteobl	bone
38	chr11:47158800-47175000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:47159000-47161800	Strong transcription	Fetal Intestine Large	intestine
40	chr11:47159000-47162800	Strong transcription	Hela-S3	cervix
41	chr11:47159200-47161800	Strong transcription	Fetal Stomach	stomach
42	chr11:47159200-47164400	Weak transcription	NH-A	brain
43	chr11:47159400-47161800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:47159400-47171200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr11:47159600-47164200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:47159600-47174000	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr11:47159800-47164400	Weak transcription	HSMM	muscle
48	chr11:47159800-47174200	Weak transcription	Primary B cells from cord blood	blood
49	chr11:47160000-47164000	Weak transcription	NHDF-Ad	bronchial
50	chr11:47160000-47164400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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