Variant report

Variant	rs7930538
Chromosome Location	chr11:60048705-60048706
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1365246	0.80[ASW][hapmap]
rs4939336	0.84[AFR][1000 genomes]
rs7104122	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1053558	chr11:59979460-60061209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3435505	chr11:60006972-60051885	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60047200-60049200	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:60047200-60049600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:60047400-60049200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:60047400-60049600	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:60047600-60049800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:60047800-60049600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:60047800-60049600	Enhancers	Primary B cells from cord blood	blood
8	chr11:60048000-60052200	Active TSS	Adipose Nuclei	Adipose
9	chr11:60048200-60049000	Active TSS	Brain Hippocampus Middle	brain
10	chr11:60048200-60049000	Active TSS	Placenta	Placenta
11	chr11:60048200-60049400	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr11:60048400-60048800	Active TSS	Rectal Mucosa Donor 31	rectum
13	chr11:60048400-60050200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:60048600-60049200	Active TSS	Fetal Muscle Trunk	muscle
15	chr11:60048600-60049600	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr11:60048600-60050200	Active TSS	Fetal Muscle Leg	muscle
17	chr11:60048600-60051000	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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