Variant report

Variant	rs7931298
Chromosome Location	chr11:57045815-57045816
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57044906..57046744-chr11:57078333..57080460,2	MCF-7	breast:
2	chr11:57044352..57046900-chr11:57092817..57094435,2	K562	blood:

Variant related genes	Relation type
ENSG00000149115	Chromatin interaction
ENSG00000254662	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10732882	0.81[JPT][hapmap]
rs10792083	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10792085	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10896596	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896599	0.82[EUR][1000 genomes]
rs10896601	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896602	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11228971	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11228988	0.86[ASN][1000 genomes]
rs11602501	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11604373	0.84[ASN][1000 genomes]
rs17573746	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1939496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2155231	0.89[EUR][1000 genomes]
rs2282623	1.00[YRI][hapmap]
rs2511026	0.85[EUR][1000 genomes]
rs2511029	0.92[EUR][1000 genomes]
rs2846049	0.84[EUR][1000 genomes]
rs2846051	0.94[EUR][1000 genomes]
rs3935069	0.93[ASN][1000 genomes]
rs4939129	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4939131	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4939134	0.81[ASN][1000 genomes]
rs5012051	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs522656	0.91[EUR][1000 genomes]
rs590240	0.92[EUR][1000 genomes]
rs7130020	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs746886	1.00[YRI][hapmap]
rs7928905	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7936545	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7943761	0.86[ASN][1000 genomes]
rs7943915	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7948723	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57042400-57046400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:57042800-57046000	Enhancers	Spleen	Spleen
3	chr11:57043000-57046400	Enhancers	Fetal Muscle Leg	muscle
4	chr11:57043000-57046400	Enhancers	Lung	lung
5	chr11:57043800-57046000	Enhancers	Right Atrium	heart
6	chr11:57043800-57046800	Enhancers	K562	blood
7	chr11:57044200-57048000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:57044200-57049000	Enhancers	Placenta	Placenta
9	chr11:57044800-57046000	Enhancers	Liver	Liver
10	chr11:57044800-57046000	Enhancers	Fetal Heart	heart
11	chr11:57044800-57046000	Enhancers	Fetal Stomach	stomach
12	chr11:57044800-57046200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr11:57044800-57046200	Enhancers	Small Intestine	intestine
14	chr11:57044800-57048400	Enhancers	HMEC	breast
15	chr11:57045000-57046000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:57045000-57046000	Enhancers	Fetal Intestine Small	intestine
17	chr11:57045000-57046000	Enhancers	Fetal Kidney	kidney
18	chr11:57045000-57046200	Enhancers	Stomach Mucosa	stomach
19	chr11:57045000-57046400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:57045000-57046600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr11:57045000-57048200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:57045000-57048200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:57045000-57048200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:57045200-57046000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:57045200-57046000	Flanking Active TSS	A549	lung
26	chr11:57045200-57046000	Flanking Active TSS	HUVEC	blood vessel
27	chr11:57045200-57046000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr11:57045200-57046600	Enhancers	H9 Cell Line	embryonic stem cell
29	chr11:57045200-57046800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:57045400-57046000	Enhancers	H1 Cell Line	embryonic stem cell
31	chr11:57045400-57046000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:57045400-57047800	Weak transcription	Aorta	Aorta
33	chr11:57045400-57048200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:57045600-57046000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:57045600-57046000	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr11:57045800-57046000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:57045800-57046000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr11:57045800-57046000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:57045800-57046000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:57045800-57046000	Enhancers	Brain Anterior Caudate	brain
41	chr11:57045800-57046000	Enhancers	Brain Cingulate Gyrus	brain
42	chr11:57045800-57046000	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr11:57045800-57046000	Enhancers	Fetal Lung	lung
44	chr11:57045800-57046000	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr11:57045800-57046000	Enhancers	Rectal Smooth Muscle	rectum
46	chr11:57045800-57046000	Enhancers	NH-A	brain
47	chr11:57045800-57046200	Enhancers	HSMMtube	muscle
48	chr11:57045800-57046400	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr11:57045800-57046400	Enhancers	Duodenum Mucosa	Duodenum
50	chr11:57045800-57046400	Enhancers	Skeletal Muscle Male	skeletal muscle

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