Variant report

Variant	rs7931646
Chromosome Location	chr11:76688065-76688066
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 213 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:208)

rs_ID	r²[population]
rs10082568	0.83[EUR][1000 genomes]
rs10431154	0.83[EUR][1000 genomes]
rs10431181	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10431182	0.83[EUR][1000 genomes]
rs10736811	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10736812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751263	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10751264	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10751267	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10751268	0.94[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10751270	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751271	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793211	0.83[EUR][1000 genomes]
rs10793212	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10793213	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10793214	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10793215	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10793216	0.82[EUR][1000 genomes]
rs10793217	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10793218	0.80[EUR][1000 genomes]
rs10793219	0.83[EUR][1000 genomes]
rs10793220	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes]
rs10793221	0.84[EUR][1000 genomes]
rs10793223	0.94[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793224	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793225	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793226	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793228	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899298	0.81[AFR][1000 genomes]
rs10899303	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899307	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs10899310	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10899311	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10899312	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10899313	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10899315	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs10899327	0.83[EUR][1000 genomes]
rs10899328	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10899329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs10899330	0.83[EUR][1000 genomes]
rs10899332	0.83[EUR][1000 genomes]
rs10899333	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899343	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899344	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237025	0.83[EUR][1000 genomes]
rs11237027	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs11237029	0.81[EUR][1000 genomes]
rs11237031	0.84[EUR][1000 genomes]
rs11237035	0.83[EUR][1000 genomes]
rs11237036	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11237052	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222825	0.83[EUR][1000 genomes]
rs12223659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279946	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12286501	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12286600	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12292156	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap]
rs12718490	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs12794575	0.94[CEU][hapmap]
rs12796913	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs12807735	0.84[EUR][1000 genomes]
rs1356455	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs1356456	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1372045	0.88[CEU][hapmap]
rs1372046	0.94[CEU][hapmap]
rs1474087	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1517905	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1517906	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1517907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517908	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517910	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1589126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1607285	0.89[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs1607287	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135319	0.83[YRI][hapmap]
rs1816748	0.83[AFR][1000 genomes]
rs1850544	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1878630	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914599	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs1914600	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs1945083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945086	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1969315	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973714	0.95[ASN][1000 genomes]
rs1980204	1.00[CEU][hapmap]
rs1980205	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap]
rs2090524	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2119456	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs2119457	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs2119458	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2156770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203755	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs2372388	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs2826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3740764	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3851191	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3914687	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4379869	1.00[CEU][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4457775	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4460836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4471450	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4488228	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4488229	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4944128	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4944129	0.81[EUR][1000 genomes]
rs4944131	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4944132	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4944134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4945115	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4945116	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs4945124	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs4945125	0.83[EUR][1000 genomes]
rs4945127	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4945129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945131	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945133	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs591043	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592671	0.88[CEU][hapmap]
rs6592676	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6592678	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592679	0.83[AFR][1000 genomes]
rs6592680	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs6592682	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6592683	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592684	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6592687	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs6592689	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592690	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592692	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592693	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592694	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7101593	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs7103308	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7103500	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7105694	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7105895	0.81[AFR][1000 genomes]
rs7106625	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7107505	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110305	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7110532	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110849	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7113282	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7113290	0.94[CEU][hapmap]
rs7113647	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7113778	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114827	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs7116513	0.81[AFR][1000 genomes]
rs7116800	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap]
rs7117545	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7117682	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7118762	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7119361	1.00[CEU][hapmap]
rs7119492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120215	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs7121273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121920	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7122736	0.84[EUR][1000 genomes]
rs7123496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7123723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7127936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128038	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128770	0.81[EUR][1000 genomes]
rs7129147	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7129388	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924613	0.93[CEU][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7924888	0.81[AFR][1000 genomes]
rs7925135	0.94[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7925652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7926122	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7926409	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7927367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927658	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs7927731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929837	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7931561	0.94[CEU][hapmap]
rs7931869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931894	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7932288	0.94[CEU][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs7933351	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs7937883	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7940782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940972	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942574	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7943913	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7950001	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7951501	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs9326485	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs938810	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs949339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs949340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs963704	1.00[CEU][hapmap];0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1802222	chr11:76683305-76709407	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76657200-76688400	Weak transcription	Gastric	stomach
3	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:76665800-76688400	Weak transcription	Right Ventricle	heart
5	chr11:76666800-76695400	Weak transcription	NHEK	skin
6	chr11:76672200-76697800	Weak transcription	Left Ventricle	heart
7	chr11:76672400-76696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:76673000-76689600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:76673800-76690400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:76674000-76688600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:76674400-76696000	Weak transcription	Small Intestine	intestine
12	chr11:76675000-76688600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:76675000-76689800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:76675000-76691600	Weak transcription	Fetal Lung	lung
15	chr11:76675000-76721800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:76675000-76725600	Weak transcription	A549	lung
17	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
18	chr11:76675200-76688200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:76675400-76688600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:76675400-76688800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:76675400-76689000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:76683000-76736400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:76683200-76688600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:76683200-76729200	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:76683400-76688200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:76683400-76689600	Weak transcription	Fetal Brain Male	brain
27	chr11:76683400-76690600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr11:76683600-76688400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:76683600-76720400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:76683600-76728000	Weak transcription	Brain Anterior Caudate	brain
31	chr11:76684200-76688200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:76684200-76689000	Enhancers	Duodenum Mucosa	Duodenum
33	chr11:76684400-76688200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:76684400-76688600	Weak transcription	Esophagus	oesophagus
35	chr11:76684400-76688800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:76684400-76699400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:76684600-76688400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr11:76684600-76688400	Weak transcription	Colonic Mucosa	Colon
39	chr11:76684600-76688600	Weak transcription	Fetal Stomach	stomach
40	chr11:76684800-76688400	Weak transcription	Spleen	Spleen
41	chr11:76684800-76688600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:76684800-76691000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:76685400-76688200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:76685600-76689600	Weak transcription	Adipose Nuclei	Adipose
45	chr11:76686000-76688600	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr11:76686200-76688200	Weak transcription	Primary T cells from cord blood	blood
47	chr11:76686600-76689000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:76686800-76689400	Weak transcription	Aorta	Aorta
49	chr11:76687000-76688400	Enhancers	Fetal Intestine Small	intestine
50	chr11:76687400-76688400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links