Variant report

Variant	rs7932169
Chromosome Location	chr11:47515897-47515898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47509851..47512898-chr11:47514221..47516696,3	MCF-7	breast:
2	chr11:47515223..47517618-chr11:47586025..47588780,2	K562	blood:
3	chr11:47507132..47509258-chr11:47514352..47516809,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149187	Chromatin interaction
ENSG00000110536	Chromatin interaction
ENSG00000213619	Chromatin interaction
ENSG00000265467	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10160313	1.00[AFR][1000 genomes]
rs1040199	1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs10742808	1.00[MKK][hapmap]
rs10769273	1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs2233358	1.00[AFR][1000 genomes]
rs35920762	1.00[AFR][1000 genomes]
rs4752841	1.00[MKK][hapmap]
rs6485757	1.00[AFR][1000 genomes]
rs7116487	1.00[AFR][1000 genomes]
rs7118918	1.00[AFR][1000 genomes]
rs7121406	0.83[AFR][1000 genomes]
rs7933674	1.00[AFR][1000 genomes]
rs7940413	1.00[AFR][1000 genomes]
rs9666418	1.00[AFR][1000 genomes]
rs967829	1.00[MKK][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1036011	chr11:47413060-47582279	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47485800-47518200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:47489200-47522800	Strong transcription	Fetal Thymus	thymus
3	chr11:47505600-47521600	Weak transcription	Fetal Brain Male	brain
4	chr11:47506400-47521200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:47507000-47517800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:47507000-47528200	Weak transcription	Small Intestine	intestine
7	chr11:47507200-47517400	Weak transcription	Aorta	Aorta
8	chr11:47507200-47522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:47508400-47530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:47508800-47516000	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:47508800-47516200	Weak transcription	Brain Substantia Nigra	brain
12	chr11:47508800-47516600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:47508800-47516600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:47508800-47519800	Weak transcription	Gastric	stomach
15	chr11:47508800-47519800	Weak transcription	Right Ventricle	heart
16	chr11:47508800-47521200	Weak transcription	Spleen	Spleen
17	chr11:47508800-47521600	Weak transcription	Fetal Brain Female	brain
18	chr11:47509000-47516200	Weak transcription	Brain Angular Gyrus	brain
19	chr11:47509000-47516600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:47509000-47517600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr11:47509000-47520000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:47509000-47521200	Weak transcription	Lung	lung
23	chr11:47509000-47534400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:47509200-47516600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:47509200-47521200	Weak transcription	Brain Germinal Matrix	brain
26	chr11:47509200-47530400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:47509400-47516800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:47510000-47521200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:47510200-47516200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:47510200-47521000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:47510200-47536800	Weak transcription	Fetal Kidney	kidney
32	chr11:47510600-47516000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:47510600-47516400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:47510600-47519800	Weak transcription	Left Ventricle	heart
35	chr11:47510600-47519800	Weak transcription	Pancreas	Pancrea
36	chr11:47510800-47516200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:47510800-47516600	Weak transcription	HUVEC	blood vessel
38	chr11:47510800-47517600	Weak transcription	Colon Smooth Muscle	Colon
39	chr11:47510800-47518000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr11:47510800-47529800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr11:47511000-47516400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr11:47511000-47516600	Weak transcription	Brain Anterior Caudate	brain
43	chr11:47511000-47520000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr11:47511000-47525000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:47511200-47517000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr11:47511200-47517200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:47511200-47520600	Weak transcription	Stomach Mucosa	stomach
48	chr11:47511200-47528600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:47511400-47516200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:47511400-47516200	Weak transcription	NHLF	lung

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