Variant report

Variant	rs7932916
Chromosome Location	chr11:17087818-17087819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17085165..17088143-chr11:17093678..17095207,2	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10766373	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10832727	0.80[ASN][1000 genomes]
rs10832728	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10832733	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832734	0.88[AMR][1000 genomes]
rs10832735	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10832736	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10832739	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10832743	0.86[EUR][1000 genomes]
rs11024113	0.83[ASN][1000 genomes]
rs11024116	0.83[ASN][1000 genomes]
rs11024130	0.80[ASN][1000 genomes]
rs11024131	0.80[ASN][1000 genomes]
rs11024143	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11024148	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024158	0.89[EUR][1000 genomes]
rs11024159	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11024163	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11821773	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12280930	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12286505	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12293395	0.82[ASN][1000 genomes]
rs1236309	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12804000	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1685932	0.86[EUR][1000 genomes]
rs17472886	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1989405	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2052188	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs214900	0.85[EUR][1000 genomes]
rs214901	0.85[EUR][1000 genomes]
rs214906	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214935	0.84[EUR][1000 genomes]
rs214936	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs214937	0.85[EUR][1000 genomes]
rs214939	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs214940	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34591697	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35933265	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4255517	0.83[ASN][1000 genomes]
rs4456241	0.83[ASN][1000 genomes]
rs4517490	0.83[ASN][1000 genomes]
rs511119	0.86[EUR][1000 genomes]
rs512852	0.86[EUR][1000 genomes]
rs527810	0.83[EUR][1000 genomes]
rs536628	0.85[EUR][1000 genomes]
rs545773	0.86[EUR][1000 genomes]
rs550667	0.86[EUR][1000 genomes]
rs553711	0.84[EUR][1000 genomes]
rs577207	0.85[EUR][1000 genomes]
rs589319	0.86[EUR][1000 genomes]
rs594034	0.84[EUR][1000 genomes]
rs598946	0.85[EUR][1000 genomes]
rs615358	0.84[EUR][1000 genomes]
rs620241	0.86[EUR][1000 genomes]
rs621246	0.86[EUR][1000 genomes]
rs635802	0.86[EUR][1000 genomes]
rs6486346	0.82[ASN][1000 genomes]
rs6486347	0.80[ASN][1000 genomes]
rs6486348	0.82[ASN][1000 genomes]
rs6486352	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6486354	0.86[EUR][1000 genomes]
rs651513	0.85[EUR][1000 genomes]
rs656623	0.85[EUR][1000 genomes]
rs662711	0.86[EUR][1000 genomes]
rs667984	0.86[EUR][1000 genomes]
rs677540	0.86[EUR][1000 genomes]
rs680205	0.85[EUR][1000 genomes]
rs7104247	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71047522	0.82[ASN][1000 genomes]
rs7106705	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7106954	0.82[ASN][1000 genomes]
rs7107283	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7107745	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7117166	0.84[ASN][1000 genomes]
rs7118006	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7123301	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7125607	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7396382	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7396958	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7478986	0.84[EUR][1000 genomes]
rs7927240	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7929927	0.83[ASN][1000 genomes]
rs7930058	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7935219	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7937880	0.82[ASN][1000 genomes]
rs7938820	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7939614	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7939750	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7946010	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7946165	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7949405	0.82[ASN][1000 genomes]
rs7950225	0.80[ASN][1000 genomes]
rs9919540	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9919600	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7932916	OR7E14P	cis	Esophagus Mucosa	GTEx
rs7932916	OR7E14P	cis	Nerve Tibial	GTEx
rs7932916	NUCB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17069400-17096200	Weak transcription	Pancreas	Pancrea
2	chr11:17070600-17088400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:17079400-17094600	Weak transcription	Primary B cells from cord blood	blood
4	chr11:17083800-17093800	Weak transcription	A549	lung
5	chr11:17084400-17095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:17084800-17095200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:17085400-17088600	Weak transcription	Brain Substantia Nigra	brain
8	chr11:17085400-17089000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:17085400-17089000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:17085400-17097200	Weak transcription	Right Ventricle	heart
11	chr11:17085400-17098200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:17086000-17094600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:17086600-17088400	Weak transcription	Fetal Stomach	stomach
14	chr11:17086800-17094200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:17087000-17093400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:17087000-17093600	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:17087000-17094000	Weak transcription	Lung	lung
18	chr11:17087000-17095400	Weak transcription	Brain Germinal Matrix	brain
19	chr11:17087000-17098000	Weak transcription	Esophagus	oesophagus
20	chr11:17087200-17093800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:17087200-17094600	Weak transcription	HSMM	muscle
22	chr11:17087200-17095000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:17087400-17094600	Weak transcription	NHEK	skin
24	chr11:17087400-17095200	Weak transcription	Fetal Lung	lung
25	chr11:17087600-17093800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:17087600-17094400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:17087600-17095000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:17087800-17089200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:17087800-17092200	Weak transcription	Fetal Brain Female	brain
30	chr11:17087800-17093800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:17087800-17094000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr11:17087800-17094600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr11:17087800-17095200	Weak transcription	NHLF	lung

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