Variant report

Variant	rs7932968
Chromosome Location	chr11:70885752-70885753
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70884611..70886617-chr11:70889284..70891189,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DHCR7-5	chr11:70885739-70885890	NONHSAT022674

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10897725	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10897726	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11232300	0.93[EUR][1000 genomes]
rs11232301	0.91[EUR][1000 genomes]
rs11232304	0.91[EUR][1000 genomes]
rs11232305	0.90[EUR][1000 genomes]
rs12271307	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12272223	0.95[EUR][1000 genomes]
rs12273513	0.91[EUR][1000 genomes]
rs12273863	0.91[EUR][1000 genomes]
rs12274896	0.92[EUR][1000 genomes]
rs12282822	0.96[EUR][1000 genomes]
rs12289383	0.91[EUR][1000 genomes]
rs12295667	0.84[EUR][1000 genomes]
rs28811899	0.86[EUR][1000 genomes]
rs28876818	0.87[EUR][1000 genomes]
rs34402475	0.86[EUR][1000 genomes]
rs4245462	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4304805	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4334036	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4348928	0.87[EUR][1000 genomes]
rs4424695	0.82[EUR][1000 genomes]
rs4944245	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55664123	0.95[EUR][1000 genomes]
rs55988920	0.95[EUR][1000 genomes]
rs56144630	0.83[EUR][1000 genomes]
rs56181437	0.86[EUR][1000 genomes]
rs56291131	0.86[EUR][1000 genomes]
rs56393668	0.85[EUR][1000 genomes]
rs59052115	0.84[EUR][1000 genomes]
rs60079515	0.84[EUR][1000 genomes]
rs61582992	0.86[EUR][1000 genomes]
rs7107858	0.82[EUR][1000 genomes]
rs7116150	0.87[EUR][1000 genomes]
rs7123898	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7125114	0.86[EUR][1000 genomes]
rs72957115	0.86[EUR][1000 genomes]
rs72959509	0.82[EUR][1000 genomes]
rs72959517	0.86[EUR][1000 genomes]
rs72959521	0.86[EUR][1000 genomes]
rs72959524	0.86[EUR][1000 genomes]
rs7931474	0.84[EUR][1000 genomes]
rs7933736	0.82[EUR][1000 genomes]
rs7933912	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7945968	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7949824	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7950101	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9888167	0.82[EUR][1000 genomes]
rs9888173	0.80[EUR][1000 genomes]
rs9888203	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9888299	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70858200-70891000	Weak transcription	Gastric	stomach
2	chr11:70864600-70886000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:70865600-70885800	Weak transcription	Pancreas	Pancrea
4	chr11:70872200-70886000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:70875000-70885800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:70877400-70890200	Weak transcription	Liver	Liver
7	chr11:70880600-70887800	Weak transcription	A549	lung
8	chr11:70880800-70886000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:70881200-70886400	Strong transcription	HepG2	liver
10	chr11:70882200-70886200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:70882400-70886000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:70882400-70886200	Weak transcription	Fetal Intestine Large	intestine
13	chr11:70882600-70892200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:70884000-70886200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:70884000-70886200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:70885000-70886000	Weak transcription	Fetal Intestine Small	intestine
17	chr11:70885400-70889200	Weak transcription	Muscle Satellite Cultured Cells	--

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