Variant report

Variant	rs7933202
Chromosome Location	chr11:59936926-59936927
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59929729..59931318-chr11:59936371..59938548,3	K562	blood:
2	chr11:59936023..59937006-chr11:59960779..59961684,2	MCF-7	breast:
3	chr11:59926973..59929170-chr11:59934444..59937067,2	K562	blood:

Variant related genes	Relation type
ENSG00000254952	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10897009	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10897011	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11230147	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11230153	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11230155	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11230160	0.83[CEU][hapmap]
rs11230161	0.88[CEU][hapmap]
rs11230180	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11230183	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11230184	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1125357	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11600716	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11605427	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12226022	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12453	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1303615	0.82[CEU][hapmap]
rs1303621	0.82[CEU][hapmap]
rs1426250	0.80[CEU][hapmap]
rs1441586	0.82[CEU][hapmap]
rs17528859	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs17529983	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17602572	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1813217	0.81[AMR][1000 genomes]
rs1820430	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1834549	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1834550	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1834551	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1834557	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2015475	0.80[CEU][hapmap]
rs2070970	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs2081545	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2123314	0.85[EUR][1000 genomes]
rs2165525	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2278867	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2583471	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs2583476	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs2847655	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2847663	0.92[CEU][hapmap]
rs2847664	0.81[AMR][1000 genomes]
rs2847666	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2847667	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2847668	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs2855017	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs28672915	0.80[EUR][1000 genomes]
rs4939311	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4939312	0.88[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4939314	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs498100	1.00[YRI][hapmap]
rs502581	0.82[CEU][hapmap]
rs516478	0.85[CEU][hapmap]
rs525794	0.82[CEU][hapmap]
rs540170	0.82[CEU][hapmap]
rs55847558	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56189574	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56201148	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs574695	0.82[CEU][hapmap]
rs581133	0.82[CEU][hapmap]
rs583296	0.82[CEU][hapmap]
rs583791	0.89[CEU][hapmap]
rs606588	0.83[CEU][hapmap]
rs610932	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs61901691	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs624663	0.89[CEU][hapmap]
rs631853	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs632185	0.89[CEU][hapmap]
rs634475	0.80[EUR][1000 genomes]
rs636147	0.86[CEU][hapmap]
rs662196	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs688030	0.81[CEU][hapmap]
rs7116190	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7124974	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7232	0.97[ASN][1000 genomes]
rs72918674	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7926344	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7926354	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7926729	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7926954	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7933805	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7935829	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7946992	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs920573	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs983392	1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv33843	chr11:59908131-59945334	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59935600-59937200	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr11:59935600-59937400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:59935600-59940400	Enhancers	HUVEC	blood vessel
4	chr11:59935800-59937000	ZNF genes & repeats	Spleen	Spleen
5	chr11:59935800-59947200	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr11:59936200-59937800	Genic enhancers	Monocytes-CD14+_RO01746	blood
7	chr11:59936200-59938200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:59936400-59937000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:59936400-59937000	ZNF genes & repeats	Dnd41	blood
10	chr11:59936400-59938600	Enhancers	Hela-S3	cervix
11	chr11:59936600-59937000	Enhancers	Adipose Nuclei	Adipose
12	chr11:59936600-59937200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood

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