Variant report

Variant	rs7934047
Chromosome Location	chr11:35367925-35367926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35367320..35368822-chr11:35387386..35389201,2	MCF-7	breast:
2	chr11:35367767..35370379-chr11:35370546..35372523,3	K562	blood:
3	chr11:35360058..35364651-chr11:35365186..35370074,5	K562	blood:
4	chr11:35360349..35364651-chr11:35366832..35371612,5	K562	blood:
5	chr11:35366512..35368832-chr11:35383993..35385771,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1042113	0.89[JPT][hapmap]
rs10444271	0.84[JPT][hapmap]
rs10488816	0.85[JPT][hapmap]
rs10488817	0.85[JPT][hapmap]
rs10488818	0.85[JPT][hapmap]
rs10768131	0.81[JPT][hapmap];0.80[LWK][hapmap]
rs10836373	0.92[EUR][1000 genomes]
rs11033064	0.87[JPT][hapmap]
rs11033071	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11033080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033083	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033089	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11033090	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12420201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12574069	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16927292	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs2273687	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2901534	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794087	0.90[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs3794097	0.84[JPT][hapmap]
rs3847612	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3847613	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3847620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3891872	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs3911898	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3925877	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4083481	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41352148	0.85[JPT][hapmap]
rs41427147	0.85[JPT][hapmap]
rs41525047	0.85[JPT][hapmap]
rs4237664	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4582949	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755398	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4756207	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs4756210	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756211	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756219	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4756220	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756221	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55709010	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55834429	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56028027	0.91[EUR][1000 genomes]
rs6484785	0.89[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7114383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72076042	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35361800-35368200	Weak transcription	Hela-S3	cervix
2	chr11:35362000-35368000	Weak transcription	Left Ventricle	heart
3	chr11:35362400-35368400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:35362600-35372800	Weak transcription	NHLF	lung
5	chr11:35363000-35369200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:35363200-35368600	Weak transcription	Liver	Liver
7	chr11:35364600-35371600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:35364800-35370000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:35365200-35368400	Enhancers	Primary T cells from cord blood	blood
10	chr11:35365400-35368000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr11:35365600-35370400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr11:35365800-35368800	Enhancers	Fetal Lung	lung
13	chr11:35365800-35369800	Enhancers	Fetal Muscle Leg	muscle
14	chr11:35366000-35370400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:35366000-35370600	Enhancers	HepG2	liver
16	chr11:35366200-35370800	Enhancers	Stomach Smooth Muscle	stomach
17	chr11:35366200-35371000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:35366200-35372000	Weak transcription	K562	blood
19	chr11:35366400-35368000	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:35366800-35368000	Weak transcription	Brain Substantia Nigra	brain
21	chr11:35366800-35368600	Enhancers	Pancreas	Pancrea
22	chr11:35366800-35369800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:35366800-35371600	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr11:35367000-35368200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:35367000-35368200	Weak transcription	Adipose Nuclei	Adipose
26	chr11:35367000-35370000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:35367000-35370200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:35367000-35385400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:35367200-35368000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:35367200-35368000	Weak transcription	Right Atrium	heart
31	chr11:35367200-35369400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr11:35367200-35369400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:35367200-35369600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:35367200-35369600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:35367200-35370000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr11:35367200-35370600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:35367200-35370600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:35367200-35370800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr11:35367200-35371200	Weak transcription	Fetal Thymus	thymus
40	chr11:35367200-35374000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:35367200-35374000	Weak transcription	Gastric	stomach
42	chr11:35367200-35380200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:35367600-35368000	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:35367600-35369000	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr11:35367600-35371600	Enhancers	NHDF-Ad	bronchial
46	chr11:35367800-35368000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr11:35367800-35368000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr11:35367800-35368000	Enhancers	Brain Anterior Caudate	brain
49	chr11:35367800-35369800	Enhancers	Brain Hippocampus Middle	brain
50	chr11:35367800-35370200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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