Variant report
| Variant | rs7935699 |
|---|---|
| Chromosome Location | chr11:71962874-71962875 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | SPI1 | chr11:71962685-71962940 | GM12891 | blood: | n/a | n/a |
| 2 | SPI1 | chr11:71962710-71962987 | GM12878 | blood: | n/a | n/a |
| 3 | MAFK | chr11:71961960-71962929 | GM12878 | blood: | n/a | chr11:71962282-71962302 chr11:71962281-71962296 chr11:71962285-71962299 chr11:71962281-71962292 chr11:71962284-71962300 chr11:71962280-71962294 chr11:71962282-71962293 chr11:71962281-71962297 chr11:71962282-71962293 chr11:71962281-71962292 |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000228286 | TF binding region |
| ENSG00000165458 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:1)
| rs_ID | r2[population] |
|---|---|
| rs17162146 | 0.83[CHD][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530623 | chr11:71088949-72020418 | Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 134 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7935699 | CCND1 | cis | parietal | SCAN |
| rs7935699 | KRTAP5-7 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
