Variant report

Variant	rs7937368
Chromosome Location	chr11:18073429-18073430
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18062974..18064641-chr11:18071715..18074662,2	K562	blood:

Variant related genes	Relation type
ENSG00000129167	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10444225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766452	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766453	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1079785	0.93[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024462	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11024470	0.83[AFR][1000 genomes]
rs11024474	0.96[CEU][hapmap]
rs11024477	0.83[AFR][1000 genomes]
rs11024478	0.87[CEU][hapmap]
rs12360537	0.91[CEU][hapmap];0.84[TSI][hapmap]
rs12361971	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1399025	0.88[CEU][hapmap]
rs2085275	0.92[CEU][hapmap]
rs3741199	0.92[CEU][hapmap];0.87[TSI][hapmap]
rs4537731	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756930	0.92[CEU][hapmap];0.87[TSI][hapmap]
rs4757610	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4757611	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6486403	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7104168	0.83[AFR][1000 genomes]
rs7104856	0.83[AFR][1000 genomes]
rs7106970	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7110238	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7113855	0.83[AFR][1000 genomes]
rs7119063	0.92[CEU][hapmap];0.87[TSI][hapmap]
rs7122118	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7130929	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7933593	0.85[ASN][1000 genomes]
rs7936469	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7939791	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7943526	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7944348	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7950282	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7950705	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950928	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7951771	0.84[ASN][1000 genomes]
rs871699	0.95[CEU][hapmap]
rs907922	0.96[CEU][hapmap]
rs964834	0.92[CEU][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3343000	chr11:18073370-18073900	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs7937368	RPS13	cis	parietal	SCAN
rs7937368	SAAL1	cis	multi-tissue	Pritchard
rs7937368	SAAL1	cis	parietal	SCAN
rs7937368	LOC494141	cis	parietal	SCAN
rs7937368	SAAL1	cis	brain	seeQTL
rs7937368	SAAL1	cis	cerebellum	SCAN
rs7937368	TPH1	cis	cerebellum	SCAN
rs7937368	SAAL1	trans	brain	seeQTL
rs7937368	SAAL1	cis	Artery Tibial	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18069000-18076400	Weak transcription	Aorta	Aorta
2	chr11:18070800-18102600	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:18072200-18076600	Weak transcription	Gastric	stomach
4	chr11:18072600-18074000	Weak transcription	Primary B cells from peripheral blood	blood

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