Variant report

Variant	rs7938933
Chromosome Location	chr11:47106314-47106315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11039045	1.00[AMR][1000 genomes]
rs11039049	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs11039095	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11039103	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039104	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039128	1.00[AMR][1000 genomes]
rs11039143	1.00[CEU][hapmap]
rs4640	1.00[CEU][hapmap]
rs4647730	1.00[CEU][hapmap]
rs4647731	1.00[CEU][hapmap]
rs4647752	1.00[CEU][hapmap]
rs7125350	1.00[AMR][1000 genomes]
rs7943429	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47077600-47113200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:47089400-47107000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:47089400-47120800	Weak transcription	Hela-S3	cervix
4	chr11:47094000-47116400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:47094000-47125200	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:47100800-47121000	Weak transcription	HSMMtube	muscle
7	chr11:47101400-47109000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:47105600-47106400	Enhancers	HSMM	muscle
9	chr11:47106200-47107800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:47106200-47108000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:47106200-47109200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:47106200-47109200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:47106200-47109400	Weak transcription	Osteobl	bone
14	chr11:47106200-47121000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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