Variant report

Variant	rs7939069
Chromosome Location	chr11:47688459-47688460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11819955	0.90[YRI][hapmap]
rs1474056	0.92[ASW][hapmap];0.96[LWK][hapmap];0.83[MKK][hapmap];0.84[YRI][hapmap]
rs16938631	1.00[ASW][hapmap];0.85[LWK][hapmap];0.96[MKK][hapmap]
rs17791016	1.00[ASW][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2305982	1.00[ASW][hapmap];0.85[LWK][hapmap];0.94[MKK][hapmap]
rs4147730	0.92[ASW][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap];0.84[YRI][hapmap]
rs4752791	1.00[ASW][hapmap];0.82[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4752843	0.92[ASW][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap];0.84[YRI][hapmap]
rs56836683	1.00[AMR][1000 genomes]
rs59205786	0.80[AFR][1000 genomes]
rs6485783	1.00[ASW][hapmap];0.85[LWK][hapmap];0.94[MKK][hapmap];0.87[YRI][hapmap]
rs7120737	1.00[ASW][hapmap];0.96[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7931089	0.83[YRI][hapmap]
rs7935802	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7945911	0.89[AFR][1000 genomes]
rs7952204	1.00[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47676800-47703400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:47682000-47688600	Weak transcription	HepG2	liver
3	chr11:47687000-47692600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:47687200-47688600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:47687200-47688800	Weak transcription	Liver	Liver
6	chr11:47687200-47693800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:47688200-47690400	Enhancers	Fetal Lung	lung
8	chr11:47688400-47688800	Enhancers	HSMM	muscle
9	chr11:47688400-47689000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:47688400-47689200	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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