Variant report

Variant	rs7939434
Chromosome Location	chr11:93418014-93418015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93414129..93418173-chr11:93428809..93431936,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10741468	1.00[EUR][1000 genomes]
rs10765632	1.00[EUR][1000 genomes]
rs10831087	1.00[EUR][1000 genomes]
rs1939566	1.00[EUR][1000 genomes]
rs2434983	1.00[EUR][1000 genomes]
rs2508574	1.00[EUR][1000 genomes]
rs4595504	1.00[EUR][1000 genomes]
rs584474	1.00[EUR][1000 genomes]
rs592526	1.00[EUR][1000 genomes]
rs604414	1.00[EUR][1000 genomes]
rs607826	1.00[EUR][1000 genomes]
rs614003	1.00[EUR][1000 genomes]
rs622231	1.00[EUR][1000 genomes]
rs624883	1.00[EUR][1000 genomes]
rs6483257	1.00[EUR][1000 genomes]
rs6483263	1.00[EUR][1000 genomes]
rs653934	1.00[EUR][1000 genomes]
rs655208	1.00[EUR][1000 genomes]
rs657177	1.00[EUR][1000 genomes]
rs666470	1.00[EUR][1000 genomes]
rs669937	1.00[EUR][1000 genomes]
rs683660	1.00[EUR][1000 genomes]
rs694307	1.00[EUR][1000 genomes]
rs7123801	1.00[EUR][1000 genomes]
rs7940598	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93395600-93446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:93397400-93441400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:93397600-93441000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:93398000-93426200	Strong transcription	Hela-S3	cervix
5	chr11:93398600-93426000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:93398800-93440800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:93398800-93442200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:93398800-93443200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:93399000-93426200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:93399000-93426200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:93399200-93439800	Strong transcription	Dnd41	blood
12	chr11:93399600-93418600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:93399600-93418800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:93399800-93418800	Strong transcription	Adipose Nuclei	Adipose
15	chr11:93399800-93422200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:93399800-93422400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr11:93399800-93442200	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:93400400-93443200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:93400400-93445600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:93400800-93419000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:93401000-93423400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:93408800-93422200	Strong transcription	Primary B cells from peripheral blood	blood
23	chr11:93409800-93423400	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr11:93410000-93444000	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr11:93410200-93441400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:93411600-93420400	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:93411600-93441400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:93411600-93442400	Strong transcription	Fetal Intestine Large	intestine
29	chr11:93411800-93419000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:93411800-93419400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:93411800-93419400	Strong transcription	Left Ventricle	heart
32	chr11:93412000-93418800	Strong transcription	Fetal Muscle Leg	muscle
33	chr11:93412000-93418800	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:93412000-93426200	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:93412200-93418800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:93412200-93418800	Strong transcription	Duodenum Mucosa	Duodenum
37	chr11:93412200-93434600	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr11:93412400-93418800	Strong transcription	NHDF-Ad	bronchial
39	chr11:93413800-93418200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:93413800-93421800	Weak transcription	Lung	lung
41	chr11:93413800-93422200	Weak transcription	Colonic Mucosa	Colon
42	chr11:93413800-93430400	Weak transcription	Aorta	Aorta
43	chr11:93413800-93430400	Weak transcription	Esophagus	oesophagus
44	chr11:93413800-93430400	Weak transcription	Pancreas	Pancrea
45	chr11:93413800-93434400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:93414000-93430000	Weak transcription	Spleen	Spleen
47	chr11:93415000-93418800	Strong transcription	Fetal Thymus	thymus
48	chr11:93415000-93418800	Strong transcription	Osteobl	bone
49	chr11:93415400-93418200	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr11:93415600-93418600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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