Variant report

Variant	rs7940062
Chromosome Location	chr11:72037226-72037227
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72036005..72039181-chr11:72039282..72042526,3	K562	blood:
2	chr11:72035783..72037899-chr11:72043244..72045662,2	MCF-7	breast:
3	chr11:72032057..72034532-chr11:72036691..72039039,2	MCF-7	breast:
4	chr11:72022912..72025583-chr11:72036233..72038395,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10501410	0.88[CEU][hapmap]
rs12416741	0.82[MEX][hapmap]
rs12416804	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12418637	0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12421674	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17162126	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1784257	0.82[MEX][hapmap]
rs2508201	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2508865	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3750906	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3900852	0.94[MEX][hapmap];0.85[TSI][hapmap]
rs472837	0.81[MEX][hapmap]
rs474629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs504217	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55721826	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55930012	0.84[EUR][1000 genomes]
rs56076328	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56171963	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58044536	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58941166	0.80[EUR][1000 genomes]
rs58945323	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs590732	0.82[MEX][hapmap]
rs60081894	0.89[EUR][1000 genomes]
rs61036532	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs680660	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73528886	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73530718	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73530724	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73530754	0.91[EUR][1000 genomes]
rs73530756	0.91[EUR][1000 genomes]
rs73530785	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72001000-72039800	Weak transcription	Psoas Muscle	Psoas
2	chr11:72002800-72044600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:72003200-72041800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr11:72003200-72041800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:72006200-72040000	Weak transcription	Stomach Mucosa	stomach
6	chr11:72008400-72044600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:72012800-72070600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:72013600-72040200	Weak transcription	Fetal Kidney	kidney
9	chr11:72013600-72040800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:72014600-72045000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:72020400-72039600	Weak transcription	Fetal Lung	lung
12	chr11:72020400-72039600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:72021800-72037400	Weak transcription	HMEC	breast
14	chr11:72024600-72042200	Weak transcription	Small Intestine	intestine
15	chr11:72025600-72054000	Weak transcription	GM12878-XiMat	blood
16	chr11:72026200-72044600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:72026600-72037800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:72026600-72067400	Weak transcription	Fetal Intestine Large	intestine
19	chr11:72026800-72044200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:72027000-72037400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:72027000-72041400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:72027000-72044800	Weak transcription	Colonic Mucosa	Colon
23	chr11:72027200-72045000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:72027400-72039400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:72027600-72060600	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:72027800-72038200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:72027800-72044200	Weak transcription	Thymus	Thymus
28	chr11:72028000-72039800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr11:72028000-72045200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:72028200-72037400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:72028200-72039400	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:72028200-72042800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:72028200-72044600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:72028200-72044800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr11:72028400-72038200	Weak transcription	Brain Angular Gyrus	brain
36	chr11:72028400-72038400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:72028400-72038600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:72028400-72043200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:72028400-72060800	Weak transcription	Gastric	stomach
40	chr11:72028600-72039400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:72028600-72047000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:72029000-72041600	Weak transcription	Brain Substantia Nigra	brain
43	chr11:72029200-72037600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr11:72029400-72039800	Weak transcription	Fetal Brain Female	brain
45	chr11:72029600-72037600	Weak transcription	NHEK	skin
46	chr11:72030200-72037600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:72030200-72038000	Weak transcription	Spleen	Spleen
48	chr11:72030200-72038200	Weak transcription	Esophagus	oesophagus
49	chr11:72030600-72037400	Weak transcription	Liver	Liver
50	chr11:72030600-72039600	Weak transcription	Ovary	ovary

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