Variant report

Variant	rs7941173
Chromosome Location	chr11:47617006-47617007
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
C1QTNF4	TF binding region
ENSG00000149187	Chromatin interaction
ENSG00000110536	Chromatin interaction
ENSG00000213619	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10769281	1.00[AFR][1000 genomes]
rs10838735	0.96[AFR][1000 genomes]
rs2233354	0.96[AFR][1000 genomes]
rs4256934	0.96[AFR][1000 genomes]
rs4284367	0.96[AFR][1000 genomes]
rs4303193	0.96[AFR][1000 genomes]
rs4331047	0.96[AFR][1000 genomes]
rs4418760	0.84[AFR][1000 genomes]
rs4434961	0.96[AFR][1000 genomes]
rs4486587	0.96[AFR][1000 genomes]
rs4623856	0.96[AFR][1000 genomes]
rs6416137	0.87[AFR][1000 genomes]
rs6485760	0.96[AFR][1000 genomes]
rs6485762	0.96[AFR][1000 genomes]
rs6485764	0.88[AFR][1000 genomes]
rs7103092	0.96[AFR][1000 genomes]
rs7103351	0.84[AFR][1000 genomes]
rs7105784	1.00[AMR][1000 genomes]
rs7105845	0.96[AFR][1000 genomes]
rs7109012	0.96[AFR][1000 genomes]
rs7114033	1.00[EUR][1000 genomes]
rs7118271	0.96[AFR][1000 genomes]
rs7119578	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7129821	0.84[AFR][1000 genomes]
rs7949024	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47607000-47632800	Weak transcription	Dnd41	blood
2	chr11:47616000-47628200	Weak transcription	Right Atrium	heart
3	chr11:47616200-47617400	Enhancers	Left Ventricle	heart
4	chr11:47616200-47617400	Enhancers	Right Ventricle	heart
5	chr11:47616400-47617600	Enhancers	Fetal Heart	heart
6	chr11:47616400-47627000	Weak transcription	Pancreas	Pancrea
7	chr11:47616400-47628200	Weak transcription	HSMMtube	muscle
8	chr11:47616400-47628400	Weak transcription	Ovary	ovary
9	chr11:47616600-47617200	Active TSS	Brain Anterior Caudate	brain
10	chr11:47616600-47621200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:47616600-47631400	Weak transcription	Spleen	Spleen
12	chr11:47616600-47632400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:47616600-47632600	Weak transcription	Brain Substantia Nigra	brain
14	chr11:47616800-47617200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
15	chr11:47616800-47619200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:47616800-47620800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:47616800-47621200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:47616800-47624000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:47617000-47620800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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