Variant report

Variant	rs7941252
Chromosome Location	chr11:46906219-46906220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46906050..46908923-chr11:46929024..46931745,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1007738	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10734548	0.82[EUR][1000 genomes]
rs10734549	0.90[EUR][1000 genomes]
rs10742784	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10769208	0.90[EUR][1000 genomes]
rs10769211	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769212	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10838620	0.89[EUR][1000 genomes]
rs10838624	0.86[ASN][1000 genomes]
rs10838627	0.92[ASN][1000 genomes]
rs10838628	0.92[ASN][1000 genomes]
rs10838629	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039002	0.82[ASN][1000 genomes]
rs11039014	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11039017	0.92[ASN][1000 genomes]
rs11039018	0.85[ASN][1000 genomes]
rs11039024	0.81[ASN][1000 genomes]
rs12806577	0.86[EUR][1000 genomes]
rs12807111	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1551744	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1809293	0.83[ASN][1000 genomes]
rs2035068	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2290883	0.86[ASN][1000 genomes]
rs2290884	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2306026	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2306027	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2306028	0.86[ASN][1000 genomes]
rs2306033	0.85[ASN][1000 genomes]
rs2306035	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2306036	0.86[ASN][1000 genomes]
rs2306037	0.85[ASN][1000 genomes]
rs2867219	0.81[ASN][1000 genomes]
rs2903522	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3816614	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3829940	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4075619	0.88[EUR][1000 genomes]
rs4294527	0.90[EUR][1000 genomes]
rs4752940	0.82[ASN][1000 genomes]
rs4752946	0.86[ASN][1000 genomes]
rs4752947	0.86[ASN][1000 genomes]
rs60258676	0.86[ASN][1000 genomes]
rs6485692	0.83[EUR][1000 genomes]
rs6485695	0.90[EUR][1000 genomes]
rs7101374	0.90[EUR][1000 genomes]
rs7107778	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7109707	0.90[EUR][1000 genomes]
rs7118170	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7119247	0.94[ASN][1000 genomes]
rs7480140	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7480260	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7929294	0.81[EUR][1000 genomes]
rs7934421	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7940441	0.86[EUR][1000 genomes]
rs7940578	0.83[EUR][1000 genomes]
rs7940682	0.81[EUR][1000 genomes]
rs7941894	0.82[EUR][1000 genomes]
rs7943866	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs898604	0.86[ASN][1000 genomes]
rs964551	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
3	chr11:46868800-46913000	Weak transcription	A549	lung
4	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:46877400-46909200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:46877400-46909200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
13	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:46878000-46908200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:46878400-46909600	Strong transcription	Fetal Muscle Leg	muscle
16	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:46879000-46909000	Strong transcription	Duodenum Mucosa	Duodenum
18	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:46880800-46910800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
21	chr11:46886200-46907000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:46887600-46918600	Weak transcription	NHDF-Ad	bronchial
23	chr11:46895400-46917400	Weak transcription	NHLF	lung
24	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
25	chr11:46897400-46907400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:46897400-46921800	Weak transcription	HMEC	breast
27	chr11:46897600-46916800	Weak transcription	Psoas Muscle	Psoas
28	chr11:46897600-46917200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:46898600-46914400	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:46898600-46916600	Weak transcription	Liver	Liver
31	chr11:46898800-46906600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:46898800-46916600	Weak transcription	Gastric	stomach
33	chr11:46898800-46920000	Weak transcription	Stomach Mucosa	stomach
34	chr11:46899000-46910400	Weak transcription	NHEK	skin
35	chr11:46899000-46916000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:46899600-46914200	Weak transcription	Brain Germinal Matrix	brain
37	chr11:46900400-46914600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:46900800-46907400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:46900800-46923400	Weak transcription	Aorta	Aorta
40	chr11:46901000-46906600	Weak transcription	Brain Angular Gyrus	brain
41	chr11:46901000-46906800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:46901000-46906800	Weak transcription	Pancreas	Pancrea
43	chr11:46901000-46913400	Weak transcription	Right Ventricle	heart
44	chr11:46901400-46907200	Weak transcription	Fetal Brain Female	brain
45	chr11:46901400-46917400	Weak transcription	NH-A	brain
46	chr11:46902200-46908800	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:46902200-46909000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:46902400-46908600	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:46902400-46908800	Strong transcription	Brain Anterior Caudate	brain
50	chr11:46902600-46909200	Strong transcription	Fetal Intestine Large	intestine

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