Variant report

Variant	rs7941873
Chromosome Location	chr11:72107160-72107161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72105175..72107187-chr11:72143620..72145329,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162129	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17162091	0.82[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap]
rs2163125	0.81[ASW][hapmap]
rs2365379	0.90[ASN][1000 genomes]
rs55888146	0.90[ASN][1000 genomes]
rs55907154	0.81[ASN][1000 genomes]
rs55970551	0.83[ASN][1000 genomes]
rs55989089	0.90[ASN][1000 genomes]
rs57191897	0.86[ASN][1000 genomes]
rs59755180	0.90[ASN][1000 genomes]
rs60549044	0.90[ASN][1000 genomes]
rs7122350	0.83[ASN][1000 genomes]
rs714548	0.82[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap]
rs73532651	0.83[ASN][1000 genomes]
rs7952074	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72065000-72110800	Weak transcription	Hela-S3	cervix
2	chr11:72069400-72111400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:72090400-72123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:72091400-72109600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:72091400-72111400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:72091600-72119200	Weak transcription	Thymus	Thymus
7	chr11:72093800-72109400	Weak transcription	Pancreas	Pancrea
8	chr11:72095200-72112800	Weak transcription	Fetal Stomach	stomach
9	chr11:72095800-72110600	Weak transcription	Dnd41	blood
10	chr11:72096200-72108000	Weak transcription	Primary B cells from cord blood	blood
11	chr11:72096200-72110600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:72098200-72108800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:72099200-72110600	Weak transcription	HSMM	muscle
14	chr11:72099200-72110800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:72099200-72111200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:72099200-72111400	Weak transcription	HSMMtube	muscle
17	chr11:72099200-72111600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:72099200-72111600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:72099200-72112800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:72099200-72112800	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:72099200-72112800	Weak transcription	Lung	lung
22	chr11:72099200-72115000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:72099200-72115600	Weak transcription	NHDF-Ad	bronchial
24	chr11:72099200-72122800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:72099600-72125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:72099600-72125000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:72100000-72109200	Weak transcription	Osteobl	bone
28	chr11:72100200-72111400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:72100400-72117400	Weak transcription	HMEC	breast
30	chr11:72101400-72111600	Weak transcription	Gastric	stomach
31	chr11:72102000-72110800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:72102000-72111400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:72102400-72111400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:72102600-72112600	Weak transcription	Fetal Intestine Small	intestine
35	chr11:72103400-72109000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:72103400-72111400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:72103400-72120000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:72103600-72107200	Weak transcription	K562	blood
39	chr11:72103600-72111600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:72103600-72111600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:72103600-72116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:72104000-72111000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:72104200-72111400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:72104200-72111400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:72104200-72111600	Weak transcription	Spleen	Spleen
46	chr11:72104200-72113600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:72104400-72111800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:72104800-72107400	Weak transcription	HepG2	liver
49	chr11:72104800-72107800	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr11:72105000-72122200	Weak transcription	GM12878-XiMat	blood

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