Variant report

Variant	rs7942730
Chromosome Location	chr11:56128062-56128063
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11227518	1.00[CEU][hapmap]
rs12270268	1.00[CEU][hapmap]
rs12272629	0.95[EUR][1000 genomes]
rs17541821	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17541876	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17542961	1.00[CEU][hapmap]
rs17546536	0.86[EUR][1000 genomes]
rs17547207	1.00[CEU][hapmap]
rs17547284	1.00[CEU][hapmap]
rs17547542	1.00[CEU][hapmap]
rs17613345	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17614327	1.00[CEU][hapmap]
rs17627302	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17628586	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17628691	0.88[EUR][1000 genomes]
rs17629033	0.86[EUR][1000 genomes]
rs17629218	0.86[EUR][1000 genomes]
rs17629804	1.00[CEU][hapmap]
rs1807254	0.88[EUR][1000 genomes]
rs1945237	1.00[CEU][hapmap]
rs1945262	1.00[CEU][hapmap]
rs2035397	1.00[AFR][1000 genomes]
rs55706115	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55771448	0.88[EUR][1000 genomes]
rs55892403	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56077409	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56078926	0.86[EUR][1000 genomes]
rs56163075	0.86[EUR][1000 genomes]
rs56394926	0.84[EUR][1000 genomes]
rs61888282	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61888286	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61888289	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61888309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61888312	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61888313	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61901983	0.89[EUR][1000 genomes]
rs61902021	0.88[EUR][1000 genomes]
rs61902022	0.88[EUR][1000 genomes]
rs61902863	0.88[EUR][1000 genomes]
rs61902883	0.88[EUR][1000 genomes]
rs61902885	0.88[EUR][1000 genomes]
rs61902915	0.88[EUR][1000 genomes]
rs61902916	0.88[EUR][1000 genomes]
rs61902921	0.88[EUR][1000 genomes]
rs61903478	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903482	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61903483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61903484	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61903485	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61903486	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61903487	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61903530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903531	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903536	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903537	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61903541	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61904062	0.86[EUR][1000 genomes]
rs61904063	0.86[EUR][1000 genomes]
rs61904064	0.86[EUR][1000 genomes]
rs7103598	0.89[EUR][1000 genomes]
rs7106248	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7111634	1.00[CEU][hapmap]
rs7114870	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7119253	1.00[CEU][hapmap]
rs7119614	0.81[EUR][1000 genomes]
rs7121384	0.98[EUR][1000 genomes]
rs7121385	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7121991	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7123108	1.00[CEU][hapmap]
rs7124023	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7125690	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7126549	0.88[EUR][1000 genomes]
rs7130906	0.86[EUR][1000 genomes]
rs716103	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs716104	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7927015	0.91[CEU][hapmap]
rs7932621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7951134	0.95[EUR][1000 genomes]
rs7951506	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv832161	chr11:56046173-56166964	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv555096	chr11:56084444-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
5	nsv555097	chr11:56084611-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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