Variant report

Variant	rs7944021
Chromosome Location	chr11:46960810-46960811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46960359..46964188-chr11:46967085..46970047,4	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10838638	0.80[AMR][1000 genomes]
rs11039048	0.80[AMR][1000 genomes]
rs11488791	0.89[AMR][1000 genomes]
rs12224831	0.80[AMR][1000 genomes]
rs12273333	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12274845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280455	0.89[AMR][1000 genomes]
rs12290283	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12291377	0.84[AMR][1000 genomes]
rs2035067	0.80[AMR][1000 genomes]
rs4752814	0.80[AMR][1000 genomes]
rs57683872	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs59520560	0.89[AMR][1000 genomes]
rs60741480	0.89[AMR][1000 genomes]
rs6485713	0.89[AMR][1000 genomes]
rs6485718	0.89[AMR][1000 genomes]
rs7117243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7117590	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7123059	0.89[AMR][1000 genomes]
rs73462027	0.89[AMR][1000 genomes]
rs7935192	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7940468	0.89[AMR][1000 genomes]
rs7945052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804415	0.89[AMR][1000 genomes]
rs9971621	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46958600-46973800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:46958800-46969400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:46959000-46962200	Weak transcription	Osteobl	bone
4	chr11:46959000-46962400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:46959000-46962600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:46959000-46962800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:46959000-46964600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:46959000-46964800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:46959000-46966200	Weak transcription	Placenta	Placenta
10	chr11:46959000-46966800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:46959000-46968000	Weak transcription	Spleen	Spleen
12	chr11:46959000-46968800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:46959000-46969000	Weak transcription	Brain Substantia Nigra	brain
14	chr11:46959000-46969200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:46959000-46969400	Weak transcription	Colonic Mucosa	Colon
16	chr11:46959000-46969400	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:46959000-46969400	Weak transcription	Pancreas	Pancrea
18	chr11:46959000-46969600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:46959000-46969600	Weak transcription	HSMMtube	muscle
20	chr11:46959000-46973400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:46959000-46973600	Weak transcription	HUVEC	blood vessel
22	chr11:46959000-46973800	Weak transcription	Primary T cells from cord blood	blood
23	chr11:46959000-46973800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:46959000-46973800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:46959000-46975600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:46959000-46977000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:46959000-46980000	Weak transcription	Aorta	Aorta
28	chr11:46959000-46980000	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:46959000-46980000	Weak transcription	Ovary	ovary
30	chr11:46959000-46980200	Weak transcription	Primary B cells from cord blood	blood
31	chr11:46959000-46980200	Weak transcription	Gastric	stomach
32	chr11:46959000-46980200	Weak transcription	Lung	lung
33	chr11:46959000-46980200	Weak transcription	Thymus	Thymus
34	chr11:46959000-46981000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr11:46959000-46982200	Weak transcription	Fetal Kidney	kidney
36	chr11:46959000-46982400	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:46959000-46982600	Weak transcription	Fetal Thymus	thymus
38	chr11:46959000-46998600	Weak transcription	Left Ventricle	heart
39	chr11:46959200-46961200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:46959200-46961200	Weak transcription	Stomach Mucosa	stomach
41	chr11:46959200-46961800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:46959200-46961800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:46959200-46962000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:46959200-46962000	Weak transcription	HSMM	muscle
45	chr11:46959200-46962200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:46959200-46962400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:46959200-46962400	Weak transcription	Fetal Lung	lung
48	chr11:46959200-46963400	Weak transcription	Fetal Intestine Small	intestine
49	chr11:46959200-46964600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:46959200-46965200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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