Variant report

Variant	rs7944746
Chromosome Location	chr11:49124200-49124201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:49124021-49124247	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000254412	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs17815807	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs17821682	0.87[AMR][1000 genomes]
rs2002868	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2031086	0.87[AMR][1000 genomes]
rs2866146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34534366	0.87[AMR][1000 genomes]
rs3868868	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3872565	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55869423	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55956951	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55987311	0.87[AMR][1000 genomes]
rs56039736	0.87[AMR][1000 genomes]
rs56307959	0.83[EUR][1000 genomes]
rs61885250	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61885251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61886467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61886480	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61886481	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61886482	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61886483	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61886486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61886487	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61886489	0.87[AMR][1000 genomes]
rs61886492	0.82[AFR][1000 genomes]
rs61886493	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61886494	0.87[AMR][1000 genomes]
rs61886495	0.87[AMR][1000 genomes]
rs61886498	0.87[AMR][1000 genomes]
rs61886507	0.87[AMR][1000 genomes]
rs61886509	0.87[AMR][1000 genomes]
rs61886511	0.87[AMR][1000 genomes]
rs61886512	0.87[AMR][1000 genomes]
rs61886517	0.87[AMR][1000 genomes]
rs61886529	0.87[AMR][1000 genomes]
rs61886530	0.87[AMR][1000 genomes]
rs61886531	0.87[AMR][1000 genomes]
rs61886532	0.87[AMR][1000 genomes]
rs6485967	0.87[AMR][1000 genomes]
rs7106778	0.87[AMR][1000 genomes]
rs7109497	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7113939	0.87[AMR][1000 genomes]
rs7116845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7119205	0.87[AMR][1000 genomes]
rs7120140	0.87[AMR][1000 genomes]
rs7122398	0.87[AMR][1000 genomes]
rs7123690	0.87[AMR][1000 genomes]
rs7124497	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs7126361	0.87[AMR][1000 genomes]
rs7126472	0.87[AMR][1000 genomes]
rs7126892	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs7924345	1.00[CEU][hapmap]
rs7925435	0.87[AMR][1000 genomes]
rs7940776	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7940887	0.88[EUR][1000 genomes]
rs7941283	1.00[CEU][hapmap]
rs7944183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7951234	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759824	chr11:48303671-49185190	Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv1828260	chr11:48735614-49162948	Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv427886	chr11:48850348-49185190	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv2758268	chr11:48856977-49185190	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv832145	chr11:49002873-49185190	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1054955	chr11:49007476-49138758	Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv897484	chr11:49042866-49162948	ZNF genes & repeats Enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv1835275	chr11:49111467-49131149	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv554347	chr11:49111467-49862647	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv319	chr11:49123918-49144093	Inactive region	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv975175	chr11:49124095-49140526	Inactive region	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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