Variant report

Variant	rs7945341
Chromosome Location	chr11:120127535-120127536
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120116039..120118601-chr11:120127527..120129964,2	MCF-7	breast:
2	chr11:120126805..120129444-chr11:120151052..120153033,2	MCF-7	breast:
3	chr11:120106000..120109277-chr11:120123883..120131527,10	K562	blood:
4	chr11:120126928..120129765-chr11:120172517..120174089,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM29-1	chr11:120127185-120127702	ENSG00000259541.1
2	lnc-TRIM29-1	chr11:120126721-120127702	ENSG00000259541.1

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17123835	1.00[AMR][1000 genomes]
rs55816695	1.00[AMR][1000 genomes]
rs7110919	1.00[AMR][1000 genomes]
rs73578290	1.00[AMR][1000 genomes]
rs73582234	1.00[AMR][1000 genomes]
rs73582257	1.00[AMR][1000 genomes]
rs73582276	1.00[AMR][1000 genomes]
rs73582290	1.00[AMR][1000 genomes]
rs73584104	1.00[AMR][1000 genomes]
rs7927594	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120125800-120127600	Bivalent Enhancer	Fetal Heart	heart
2	chr11:120126400-120127600	Bivalent Enhancer	Left Ventricle	heart
3	chr11:120126800-120127600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr11:120126800-120127600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr11:120126800-120127600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr11:120126800-120128400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:120127000-120127600	Bivalent Enhancer	HMEC	breast
8	chr11:120127000-120131000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:120127000-120132000	Weak transcription	Brain Germinal Matrix	brain
10	chr11:120127400-120127600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr11:120127400-120127600	Weak transcription	Right Atrium	heart
12	chr11:120127400-120127600	Bivalent Enhancer	GM12878-XiMat	blood
13	chr11:120127400-120128200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:120127400-120128400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:120127400-120128600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:120127400-120130600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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