Variant report

Variant	rs7945756
Chromosome Location	chr11:17199726-17199727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10430892	1.00[EUR][1000 genomes]
rs10741723	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10832730	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10832753	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11024142	0.85[ASN][1000 genomes]
rs11024145	0.85[ASN][1000 genomes]
rs11024146	0.86[ASN][1000 genomes]
rs11024147	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[ASN][1000 genomes]
rs11024150	0.88[ASN][1000 genomes]
rs11024152	0.86[ASN][1000 genomes]
rs11024153	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11024185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024186	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024190	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024197	1.00[EUR][1000 genomes]
rs11024199	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024201	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11024226	1.00[EUR][1000 genomes]
rs11024243	1.00[EUR][1000 genomes]
rs11024245	1.00[EUR][1000 genomes]
rs11024246	1.00[EUR][1000 genomes]
rs12225195	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12226898	0.81[ASN][1000 genomes]
rs12576590	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17847728	0.87[ASN][1000 genomes]
rs214933	0.83[YRI][hapmap]
rs2302511	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4757499	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61555995	1.00[EUR][1000 genomes]
rs6416174	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6486349	0.85[ASN][1000 genomes]
rs6486350	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6486353	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67771121	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7113011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7123825	0.86[ASN][1000 genomes]
rs7125085	0.89[AFR][1000 genomes]
rs7125829	1.00[YRI][hapmap]
rs7127204	0.94[ASN][1000 genomes]
rs7127347	0.91[CHB][hapmap]
rs72632986	0.86[ASN][1000 genomes]
rs72632987	0.86[ASN][1000 genomes]
rs72632988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632989	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72632990	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73433254	0.81[AFR][1000 genomes]
rs7928860	1.00[YRI][hapmap]
rs7929047	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7934596	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941165	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17130200-17203800	Weak transcription	Aorta	Aorta
2	chr11:17156600-17219200	Weak transcription	HSMMtube	muscle
3	chr11:17158000-17215600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:17165200-17215200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:17167400-17204400	Weak transcription	Thymus	Thymus
6	chr11:17167400-17212600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:17167400-17228000	Weak transcription	Fetal Thymus	thymus
8	chr11:17172600-17214600	Weak transcription	Fetal Brain Female	brain
9	chr11:17184800-17228800	Weak transcription	Esophagus	oesophagus
10	chr11:17185800-17207400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:17185800-17212800	Weak transcription	Pancreas	Pancrea
12	chr11:17187000-17212600	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:17187000-17228000	Weak transcription	Colonic Mucosa	Colon
14	chr11:17187200-17207200	Weak transcription	K562	blood
15	chr11:17187200-17210000	Weak transcription	Psoas Muscle	Psoas
16	chr11:17187200-17210000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:17187200-17212600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:17187200-17214000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:17187200-17214200	Weak transcription	Right Ventricle	heart
20	chr11:17187200-17226800	Weak transcription	Small Intestine	intestine
21	chr11:17189400-17203200	Weak transcription	Fetal Stomach	stomach
22	chr11:17191000-17203800	Weak transcription	Liver	Liver
23	chr11:17191000-17204000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:17191000-17207600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:17191000-17210000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:17191000-17210200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr11:17191000-17220600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:17191200-17201600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:17191200-17202600	Weak transcription	Fetal Intestine Large	intestine
30	chr11:17191200-17204200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:17191200-17204400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:17191200-17204800	Weak transcription	Primary T cells from cord blood	blood
33	chr11:17191200-17208600	Weak transcription	GM12878-XiMat	blood
34	chr11:17191200-17209800	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:17191200-17210000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:17191200-17210000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr11:17191200-17212200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:17191200-17212400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr11:17191200-17212600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr11:17191200-17213000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:17191200-17213000	Weak transcription	Dnd41	blood
42	chr11:17191200-17227800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr11:17191400-17202600	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr11:17191400-17206600	Weak transcription	Primary B cells from cord blood	blood
45	chr11:17191400-17212800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr11:17191400-17213000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:17191400-17214400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:17191600-17203200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:17191600-17203800	Weak transcription	Fetal Lung	lung
50	chr11:17191600-17212200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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