Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10466676	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs11228609	0.89[CEU][hapmap]
rs11228659	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs11228683	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11228703	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11606499	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12271019	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12290501	0.84[AMR][1000 genomes]
rs12292656	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs13377553	0.84[AMR][1000 genomes]
rs1397049	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1945270	1.00[CEU][hapmap]
rs28362018	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41391545	1.00[CEU][hapmap]
rs55677906	0.81[AMR][1000 genomes]
rs66602972	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7111150	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs7112358	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119529	1.00[CEU][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7121276	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs7483053	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971952	chr11:56361311-56452186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1051853	chr11:56393347-56523720	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56419200-56427200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr11:56426200-56427000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr11:56426600-56426800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr11:56426600-56427000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:56426600-56427000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:56426600-56427000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:56426600-56427400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:56426600-56428000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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