Variant report

Variant	rs7949024
Chromosome Location	chr11:47618748-47618749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47600620..47602164-chr11:47617972..47620796,2	MCF-7	breast:
2	chr11:47617914..47620881-chr11:47623187..47625181,2	K562	blood:
3	chr11:47614392..47617179-chr11:47617929..47620774,2	MCF-7	breast:
4	chr11:47618672..47620758-chr11:47799447..47801560,2	K562	blood:
5	chr11:47613544..47615870-chr11:47616778..47619516,2	K562	blood:

Variant related genes	Relation type
ENSG00000172247	Chromatin interaction
ENSG00000213619	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10769281	0.96[AFR][1000 genomes]
rs10838735	1.00[AFR][1000 genomes]
rs2233354	1.00[AFR][1000 genomes]
rs4256934	1.00[AFR][1000 genomes]
rs4284367	1.00[AFR][1000 genomes]
rs4303193	1.00[AFR][1000 genomes]
rs4331047	1.00[AFR][1000 genomes]
rs4418760	0.88[AFR][1000 genomes]
rs4434961	1.00[AFR][1000 genomes]
rs4486587	1.00[AFR][1000 genomes]
rs4498952	0.82[AFR][1000 genomes]
rs4623856	1.00[AFR][1000 genomes]
rs6416137	0.91[AFR][1000 genomes]
rs6485760	1.00[AFR][1000 genomes]
rs6485762	1.00[AFR][1000 genomes]
rs6485764	0.84[AFR][1000 genomes]
rs7103092	1.00[AFR][1000 genomes]
rs7103351	0.88[AFR][1000 genomes]
rs7105845	1.00[AFR][1000 genomes]
rs7109012	0.91[AFR][1000 genomes]
rs7118271	1.00[AFR][1000 genomes]
rs7119578	0.91[AFR][1000 genomes]
rs7129821	0.81[AFR][1000 genomes]
rs7941173	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47607000-47632800	Weak transcription	Dnd41	blood
2	chr11:47616000-47628200	Weak transcription	Right Atrium	heart
3	chr11:47616400-47627000	Weak transcription	Pancreas	Pancrea
4	chr11:47616400-47628200	Weak transcription	HSMMtube	muscle
5	chr11:47616400-47628400	Weak transcription	Ovary	ovary
6	chr11:47616600-47621200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:47616600-47631400	Weak transcription	Spleen	Spleen
8	chr11:47616600-47632400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:47616600-47632600	Weak transcription	Brain Substantia Nigra	brain
10	chr11:47616800-47619200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:47616800-47620800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:47616800-47621200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:47616800-47624000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:47617000-47620800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:47617400-47620800	Weak transcription	Brain Anterior Caudate	brain
16	chr11:47617400-47628200	Weak transcription	Right Ventricle	heart
17	chr11:47617600-47643200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:47617800-47632400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr11:47618000-47628200	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:47618000-47639200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:47618400-47628200	Weak transcription	Fetal Intestine Small	intestine
22	chr11:47618400-47628600	Weak transcription	Liver	Liver

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